New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3118871 =	56 (1.010)	3 (0.060)	3/248	NT	6.0%	coding (570/810 nt)	PP_2735	hypothetical protein
	?	NC_002947	3118971 =	39 (0.730)					coding (470/810 nt)	PP_2735	hypothetical protein

CATCGAGTGGCTTGCGGCGCAGGGCGAGGTCGGCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCACCCGTCACGGTCATGGCAGAAATAGAAACTCAC  >  NC_002947/3118825‑3119119                                                                                                                                                   |                                                                                                                                                     cATCGAGTGGCTTGCGGCGCAGGGCGAGGTCGGCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATg                                                                                                                                                     >  4:182280/1‑148 (MQ=255)   tCGAGTGGCTTGCGGCGCAGGGCGAGGTCGGCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGaa                                                                                                                                                  <  3:226974/149‑1 (MQ=255)      aGTGGCTTGCGGCGCAGGGCGAGGTCGGCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGc                                                                                                                                               >  4:9249/1‑149 (MQ=255)          gCTTGCGGCGCAGGGCGAGGTCGGCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTg                                                                                                                                           >  3:132050/1‑149 (MQ=255)               cggcgCAGGGCGAGGTCGGCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGa                                                                                                                                       <  4:7575/148‑1 (MQ=255)                       ggCGAGGTCGGCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAgg                                                                                                                              <  7:257478/149‑1 (MQ=255)                             gTCGGCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTgg                                                                                                                        >  8:29115/1‑149 (MQ=255)                                ggCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCa                                                                                                                      <  3:60921/148‑1 (MQ=255)                                      gAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGc                                                                                                               <  2:121530/149‑1 (MQ=255)                                            cTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGc                                                                                                                                          <  7:163390/116‑1 (MQ=255)                                            cTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGc                                                                                                                                          >  8:163390/1‑116 (MQ=255)                                            cTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCa                                                                                                         >  5:104826/1‑149 (MQ=255)                                               tgtgtcgccgttcatgccgttggacatggactatcgcctgcgctttttcctggacacggaccatgtacgcattcagatgcagaactggcaaggcggcacaTGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCg                                                                                                      >  5:237007‑M2/101‑149 (MQ=255)                                                   ccgccTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGa                                                                                                   <  3:9249/148‑1 (MQ=255)                                                           ccAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTaa                                                                                           <  7:29115/148‑1 (MQ=255)                                                             aGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTaa                                                                                           >  3:251714/1‑146 (MQ=255)                                                             aGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTaa                                                                                           <  4:251714/146‑1 (MQ=255)                                                               ccgttggacatggaatatcgcctgcgctttttcctggacacggaccatgtacgcattcagatgcagaactggcaaggcggcacaTGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGaa                                                                                       <  3:272216‑M2/64‑1 (MQ=255)                                                                  ttggacatggactatcgcctgcgctttttcctggacacggaccatgtacgcattcagatgcagaactggcaaggcggcacaTGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCg                                                                                   <  6:237007‑M2/68‑1 (MQ=255)                                                                      tCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGAAGGCGATAGTCAATGTCCAACGGCATGAACGGCGACACATGGACGGCCTTGCCGACGCTGAAGGGCCTGGGAAGGTTGCCTTGCCCCGGGAGTACGGAATGACAGCGTTCa                                                                               >  8:248280/1‑149 (MQ=255)                                                                               gTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGTTAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGc                                                                      >  4:338315/1‑149 (MQ=255)                                                                               gTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGc                                                                      >  4:197900/1‑149 (MQ=255)                                                                                      gTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCt                                                                                                                                   >  4:286917/1‑81 (MQ=255)                                                                                      gTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCt                                                                                                                                   <  3:286917/81‑1 (MQ=255)                                                                                      gTCCGTGTCCAGGAAAAAGCGCAGGAGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTgc                                                               <  3:197900/149‑1 (MQ=255)                                                                                       tCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGCTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTgcg                                                              >  4:278522/1‑149 (MQ=255)                                                                                        ccGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTc                                                                                <  4:30625/130‑1 (MQ=255)                                                                                        ccGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTc                                                                                >  3:30625/1‑130 (MQ=255)                                                                                           tgtCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACt                                                          >  5:130940/1‑149 (MQ=255)                                                                                             tCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTc                                                        >  4:74773/1‑149 (MQ=255)                                                                                                aGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCAt                                                     >  5:154356/1‑149 (MQ=255)                                                                                                  gAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCa                                                   <  6:104826/149‑1 (MQ=255)                                                                                                   aaaaaGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAg                                                  <  5:275046/149‑1 (MQ=255)                                                                                                                gATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAgg                                     <  4:132050/149‑1 (MQ=255)                                                                                                                    gTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCAc                                  <  3:182280/148‑1 (MQ=255)                                                                                                                      ccATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCACCCg                               >  6:22962/1‑149 (MQ=255)                                                                                                                             cAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGaa                                                                                                                                >  1:155071/1‑45 (MQ=255)                                                                                                                             cAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGaa                                                                                                                                <  2:155071/45‑1 (MQ=255)                                                                                                                                  gCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCACCCGTCACGGTCATgg                   <  6:154356/149‑1 (MQ=255)                                                                                                                                   cATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCACCCGTCACGGTCAt                     <  8:159544/146‑1 (MQ=255)                                                                                                                                   cATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCACCCGTCACGGTCAt                     >  7:159544/1‑146 (MQ=255)                                                                                                                                    aTGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTc                                                        >  5:299556/1‑110 (MQ=255)                                                                                                                                    aTGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTc                                                        <  6:299556/110‑1 (MQ=255)                                                                                                                                      gAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTcc                                                       >  2:188149/1‑109 (MQ=255)                                                                                                                                                acaTGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCACCCGTCACGGTCATGGCAGAAATAGAAACt     >  5:237037‑M2/4‑149 (MQ=255)                                                                                                                                                  aTGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTc                                        >  6:309899‑M2/2‑112 (MQ=255)                                                                                                                                                  aTGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTc                                        <  5:309899‑M2/111‑1 (MQ=255)                                                                                                                                                  aTGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCACCCGTCACGGTCATGGCAGAAATAGAAACTCa   >  5:131063‑M2/2‑149 (MQ=255)                                                                                                                                                   tGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCACCCGTCACGGTCATGGCAGAAATAGAAACTCAc  <  6:237037/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CATCGAGTGGCTTGCGGCGCAGGGCGAGGTCGGCCTCGAACACCTTTGTGCCGCCTTGCCAGTTCTGCATCTGAATGCGTACATGGTCCGTGTCCAGGAAAAAGCGCAGGCGATAGTCCATGTCCAACGGCATGAACGGCGACACATGGAAGGCCTTGCCGACGCTGAAGGGCCTGGCAAGGTTGCCTTGCACCGGGAGTACGTAATGAAAGCGTTCACGCCAGGGCGTGTTGCGCACTTCCATCAGGATCGCGGTCAGGCACCCGTCACGGTCATGGCAGAAATAGAAACTCAC  >  NC_002947/3118825‑3119119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.