New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3394090 | 46 (0.830) | 4 (0.080) | 4/244 | NT | 7.9% | coding (317/900 nt) | PP_2997 | protein CnmA |
? | NC_002947 | = 3394125 | 49 (0.930) | coding (282/900 nt) | PP_2997 | protein CnmA |
AGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTC > NC_002947/3393979‑3394265 | aGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGTTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGgc > 4:244348‑M2/1‑147 (MQ=255) cgcgcTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGgcga > 6:87073‑M2/1‑145 (MQ=255) cgcgcTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGgcga > 4:255970‑M2/1‑145 (MQ=255) gcgcTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGgcgat > 2:61903‑M2/1‑144 (MQ=255) tcGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTg > 5:200299/1‑149 (MQ=255) ggTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTg < 1:176108/147‑1 (MQ=255) ttGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTc < 3:136512/149‑1 (MQ=255) ccGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTccc < 1:36085/148‑1 (MQ=255) ccGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTcc > 7:72263/1‑147 (MQ=255) ccGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTcc > 4:298221/1‑147 (MQ=255) gATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCgg < 6:200299/149‑1 (MQ=255) gATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCGGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCg < 3:218785/148‑1 (MQ=255) gcgcCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGgcga < 5:179322‑M2/123‑5 (MQ=255) gcgcCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGgcga > 6:179322‑M2/1‑119 (MQ=255) atccgccTGGAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGcc > 6:14076/3‑149 (MQ=255) ccgccTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCgt < 2:70465/149‑2 (MQ=255) ccTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGgcgc < 3:298221/149‑1 (MQ=255) tCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAg > 1:338699/1‑149 (MQ=255) aGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGa > 2:225909/1‑149 (MQ=255) aTGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAg < 1:225909/149‑1 (MQ=255) aTGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGGGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAg < 1:238669/149‑1 (MQ=255) cGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCt > 1:111043/1‑149 (MQ=255) cATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCgg < 2:111043/149‑1 (MQ=255) cgcAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGcc < 8:195134/148‑1 (MQ=255) cgcAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGcc > 7:195134/1‑148 (MQ=255) cAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGcc < 2:212343/113‑1 (MQ=255) cAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGcc > 1:212343/1‑113 (MQ=255) ttGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTg < 8:72263/149‑1 (MQ=255) aGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGc < 3:120398/120‑1 (MQ=255) aGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGc > 4:120398/1‑120 (MQ=255) aTGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGc > 6:256121/1‑132 (MQ=255) aTGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGACGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGc < 5:256121/132‑1 (MQ=255) tGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGgcgcgc > 8:140721/1‑149 (MQ=255) gggCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGcgcgcg > 8:144824/1‑149 (MQ=255) agcaAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTcc < 5:193608/105‑1 (MQ=255) agcaAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTcc > 6:193608/1‑105 (MQ=255) aaGGTGATGTGGCTGGCATCGCAGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAgg > 8:238036/1‑149 (MQ=255) gtgGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATgc > 4:67799/1‑149 (MQ=255) gctggcATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATgccgc < 7:140721/149‑1 (MQ=255) tggcATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCt > 7:134253/1‑149 (MQ=255) aTCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGgcgatgccagccacatcaccttgctgcccagcatcctcaaccatctgcgcagccatgcgccgggcatccgcctggaggcggcgcggatcgacggcaataccgagagcgc < 5:182483‑M2/149‑110 (MQ=255) cGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTg > 5:298797/1‑149 (MQ=255) gCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGgcgatgccagccacatcaccttgctgcccagcatcctcaaccatctgcgcagccatgcgccgggcatccgcctggaggcggcgcggatcgacggcaataccgagagcgcgct < 6:168336‑M2/149‑113 (MQ=255) gCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGgcgatgccagccacatcaccttgctgcccagcatcctcaaccatctgcgcagccatgcgccgggcatccgcctggaggcggcgcggatcgacggcaataccgagagcgcgct > 5:168336‑M2/1‑37 (MQ=255) acaGGCGAAAACGCTGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATgccg < 3:156728/131‑1 (MQ=255) acaGGCGAAAACGCTGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATgccg > 4:156728/1‑131 (MQ=255) aGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAg > 5:175642/1‑149 (MQ=255) gCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCg > 6:183611/1‑149 (MQ=255) cGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCgg < 5:209992/149‑1 (MQ=255) cGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCgg < 5:14076/149‑1 (MQ=255) gAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATgc > 5:125099/1‑123 (MQ=255) gAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATgc < 6:125099/123‑1 (MQ=255) gAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCggg < 2:338699/149‑1 (MQ=255) gAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCggg > 4:133128/1‑149 (MQ=255) ccgcTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCa < 6:247319/149‑1 (MQ=255) cgctgcgctgTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCaa < 3:67799/149‑1 (MQ=255) gctgTGGCGgcgatgccagccacatcaccttgctgcccagcatcctcaaccatctgcgcagccatgcgccgggcatccgcctggaggcggcgcggatcgacggcaataccgagagcgcgctggaatcgggcgaagcggacctggccatc > 6:182483‑M2/1‑9 (MQ=255) gctgTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGaa > 7:67479/1‑128 (MQ=255) gctgTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGaa < 8:67479/128‑1 (MQ=255) gctgTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTc < 5:183611/149‑1 (MQ=255) gctgTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTc < 7:238036/149‑1 (MQ=255) | AGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGATTCCAGCACCTCGCGGCACGGCCCTATCAGCTGATCGGCGCGCGGGGTAGGGGCCATGCCGCCTGGCGTGCGCACGAACAGCGGGTCGTTCAATTGCTC > NC_002947/3393979‑3394265 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |