New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3542564 =	58 (1.050)	4 (0.080)	4/240	NT	7.4%	coding (159/966 nt)	galE	UDP‑glucose 4‑epimerase
	?	NC_002947	3542609 =	46 (0.890)					coding (114/966 nt)	galE	UDP‑glucose 4‑epimerase

GTTGTTCTGGTAGTACTTGCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAACCAGATATTTCATCCCCACCTCCTGGAATCTGCTGTTTACAGACGCA  >  NC_002947/3542462‑3542756                                                                                                                                                    |                                                                                                                                                     gttgttCTGGTAGTACTTGCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATAc                                                                                                                                                     >  7:238515/1‑149 (MQ=255) gttgtgggtggtgcgggctacattggctcgcacatggtcaagcacctgctcgccgccggccatgaagtgctggtggcggacctggtctcacctggccccggtATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATa                                                                                                                                                      >  7:150455‑M1/103‑148 (MQ=255)     ttCTGGTAGTACTTGCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCggg                                                                                                                                                 >  3:119393/1‑149 (MQ=255)     ttCTGGTAGTACTTGCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCgg                                                                                                                                                  <  3:50044/148‑1 (MQ=255)     tgggtggtgcgggctacattggctcgcacatggtcaagcacctgctcgccgccggccatgaagtgctggtggcggacctggtctcacctggccccggtATCCAGTGCGGCTTCGTCGGCGATGACGAGCTTGGCCCACTGGATACCggg                                                                                                                                                 >  1:304430‑M1/99‑149 (MQ=255)          gtagtaCTTGCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAg                                                                                                                                            >  4:211506/1‑149 (MQ=255)          gtagtaCTTGCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAg                                                                                                                                            <  2:52448/149‑1 (MQ=255)                cTTGCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTgaga                                                                                                                                      >  5:264135/1‑149 (MQ=255)                cTTGCAGGGGGCACTGACCGACTCGCCCACGTGAATGAACGAGGCGAAGTGGAACACAGCATCGAAGCGACACCCGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTgaga                                                                                                                                      >  7:308407/1‑149 (MQ=255)                 ttGCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATATCGGGGCCAGGTGAGAc                                                                                                                                     >  5:128446/1‑149 (MQ=255)                   gCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGAc                                                                                                                                     >  8:119698/1‑147 (MQ=255)                    ccGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGTCCCACTGGATACCGGGGCCAGGTGAGACCAg                                                                                                                                  <  1:213323/149‑1 (MQ=255)                     cGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAgg                                                                                                                                 <  7:119698/149‑1 (MQ=255)                       ggggCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTc                                                                                                                               >  4:294903/1‑149 (MQ=255)                       ggggCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTc                                                                                                                               >  4:143317/1‑149 (MQ=255)                        gggCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGcc                                                                                                                                              <  2:40124/133‑1 (MQ=255)                        gggCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGcc                                                                                                                                              >  1:40124/1‑133 (MQ=255)                        ctgCACTGACCGACTCGCCCACTTGAATGAACGATGCGAAGTTGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTTGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTcc                                                                                                                              <  1:95477/147‑1 (MQ=255)                           cACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACAGCATCGAAGCGACACACTCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCAAGGTGAGACCAggacg                                                                                                                              >  2:95477/1‑143 (MQ=255)                              tGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCggg                                                                                                                                                 <  3:208111/124‑1 (MQ=255)                              tGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCggg                                                                                                                                                 >  4:208111/1‑124 (MQ=255)                                        gCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATATCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCa                                                                                                              <  6:128446/148‑1 (MQ=255)                                        gCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑Tc                                                                                                               <  1:17438/147‑1 (MQ=255)                                        gCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCa                                                                                                              <  4:119393/148‑1 (MQ=255)                                        gCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCa                                                                                                              <  6:141625/148‑1 (MQ=255)                                        gCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCa                                                                                                              <  3:211506/148‑1 (MQ=255)                                          ccACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATgg                                                                                                           <  3:294903/149‑1 (MQ=255)                                                  atgaaCGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCggcggc                                                                                                   <  8:238515/149‑1 (MQ=255)                                                            cGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGc                                                                                         <  3:143317/149‑1 (MQ=255)                                                                   gAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCACGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCa                                                                                  >  8:37411/1‑149 (MQ=255)                                                                        ccGCATCGAAGCGACACACGCAAAACAGCACATCAAGTGCGGCTTCGTCGGCGATGTCGACCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGACGGCGGCGAGCAGGTGCTTGACCATGTGc                                                                             >  2:263577/1‑149 (MQ=255)                                                                         cGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTCGACCATGTGc                                                                             >  6:74463/1‑148 (MQ=255)                                                                           cATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAg                                                                          <  8:310541/149‑1 (MQ=255)                                                                               gAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCATGTGCTTAACCATGTGCGAGCCaa                                                                      <  6:264135/149‑1 (MQ=255)                                                                                 aGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCaa                                                                      >  7:231740/1‑147 (MQ=255)                                                                                 aGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCaa                                                                      <  8:231740/147‑1 (MQ=255)                                                                                 aGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATg                                                                    >  3:84644/1‑149 (MQ=255)                                                                                  gCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTCGACCATGTGCGAGCCAATGt                                                                   <  5:74463/149‑1 (MQ=255)                                                                                     acacacGCCAAACATGACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTTGATACCGGGGACAGGTGTGAGCAGGTCCGCGACCAGCACTCTCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAg                                                                 <  1:263577/149‑1 (MQ=255)                                                                                          cGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGca                                                           >  5:234953/1‑149 (MQ=255)                                                                                           gCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGa                                                                           >  4:150373/1‑132 (MQ=255)                                                                                           gCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGa                                                                           <  3:150373/132‑1 (MQ=255)                                                                                           gCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGcac                                                          <  6:234953/149‑1 (MQ=255)                                                                                             cAAACAGCACATCCAGTGCGGCTTCGTGGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGcacca                                                        >  5:152703/1‑149 (MQ=255)                                                                                                 cccggtatccagtgggccaagctcgtcatcgccgacgaagccgcactggatACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCAccaccca                                                    >  1:304430‑M2/52‑149 (MQ=255)                                                                                                  aGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGca                                                           <  6:360446/141‑1 (MQ=255)                                                                                                  aGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGca                                                           >  5:360446/1‑141 (MQ=255)                                                                                                      tatccagtgggccaagctcgacatcgccgacgaagccgcactggatACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAAc                                                >  7:150455‑M2/47‑148 (MQ=255)                                                                                                       atccagtgggccaagctcgacatcgccgacgaagccgcactggatACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAAc                                                >  6:136289‑M2/46‑147 (MQ=255)                                                                                                         CCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAAc                                                <  5:219546‑M1/145‑1 (MQ=255)                                                                                                           AGTGCGGCTTCGTCGGCGATTTCTAGCTTGTCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAACCAGata                                          >  8:308407‑M1/1‑149 (MQ=255)                                                                                                                         ggCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCAccaccca                                                    <  4:168593/125‑1 (MQ=255)                                                                                                                         ggCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCAccaccca                                                    >  3:168593/1‑125 (MQ=255)                                                                                                                                  gAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAACCAGATATTTCATCCCCACCTCCTGGAATc                   >  1:101159/1‑149 (MQ=255)                                                                                                                                    gCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAACCAGATATTTCATCCCCACCTCCTGGAATctg                 >  5:34758/1‑149 (MQ=255)                                                                                                                                      aagccgcactggatACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAACCAGATATTTCATCCCCACCTCCTGGAATctgct               <  8:150455‑M2/135‑1 (MQ=255)                                                                                                                                         ccgcactggatACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAACCAGATATTTCATCCCCACCTCCTGGAATCTGCTGtt            <  2:304430‑M2/138‑1 (MQ=255)                                                                                                                                          cccACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAACCAGATATTTCATCCCCACCTCCTGGAATCTGCTGttt           <  6:152703/149‑1 (MQ=255)                                                                                                                                                    aCCGGGGCCAGGTGAGTCCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAACCAGATATTTCATCCCCACCTCCTGGAATCTGCTGTTTACAGACGCa  <  7:37411/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GTTGTTCTGGTAGTACTTGCCGGGGGCACTGACCGACTCGCCCACTTGAATGAACGAGGCGAAGTGGAACACCGCATCGAAGCGACACACGCCAAACAGCACATCCAGTGCGGCTTCGTCGGCGATGTCGAGCTTGGCCCACTGGATACCGGGGCCAGGTGAGACCAGGTCCGCCACCAGCACT‑TCATGGCCGGCGGCGAGCAGGTGCTTGACCATGTGCGAGCCAATGTAGCCCGCACCACCCACAACCAGATATTTCATCCCCACCTCCTGGAATCTGCTGTTTACAGACGCA  >  NC_002947/3542462‑3542756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.