New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3960868	40 (0.720)	5 (0.090)	5/246	NT	10.5%	coding (156/1074 nt)	PP_3491	enoly‑coenzyme A hydratase/isomerase family protein
	?	NC_002947	= 3960907	47 (0.880)					coding (195/1074 nt)	PP_3491	enoly‑coenzyme A hydratase/isomerase family protein

CGAGGTCCGCAACCAGATCGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCATCCACCGCTACCGCAAGCCGATACTGGTG  >  NC_002947/3960760‑3961051                                                                                                                                                     |                                                                                                                                                 cGAGGTCCGCAACCAGATCGGCCACCGGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACAGGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAg                                                                                                                                                 >  8:141032‑M2/1‑148 (MQ=255)         gCAACCAGATCGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAg                                                                                                                                         >  3:17242/1‑149 (MQ=255)         gCAACCAGATCGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAg                                                                                                                                         <  1:328829/149‑1 (MQ=255)         gCAACCAGATCGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAg                                                                                                                                         <  1:323624/149‑1 (MQ=255)              cAGATCGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGtt                                                                                                                                    <  3:83812/149‑1 (MQ=255)               aGATCGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCTGGGACATGGTGCGCAGCCTGCGTCAGCACATGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGtt                                                                                                                                    >  1:273025/1‑149 (MQ=255)                gATCGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCTGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCt                                                                                                                                  <  4:17242/149‑1 (MQ=255)                  tCGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCtgt                                                                                                                                <  2:185043/149‑1 (MQ=255)                   cGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCtgtg                                                                                                                               >  2:101366/1‑149 (MQ=255)                              cccTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGa                                                                                                                     >  8:110025/1‑148 (MQ=255)                               ccTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGata                                                                                                                   >  1:161712/1‑149 (MQ=255)                                    aCCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCCACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCcg                                                                                                               >  8:66931/1‑148 (MQ=255)                                      cGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCcgctc                                                                                                            <  3:246240/149‑1 (MQ=255)                                               ggTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGAACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGGGCCGGTGGCGATATCCGCTCGCTGTACGa                                                                                                   >  5:320894/1‑149 (MQ=255)                                                     aaTGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAAACCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCtt                                                                                             >  5:216247/1‑149 (MQ=255)                                                             gACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGTTGTACGACAGCTTCAAGGCCg                                                                                     >  4:319261/1‑149 (MQ=255)                                                                 cT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGa                                                                                 >  2:273619/1‑149 (MQ=255)                                                                  t‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGa                                                                                 >  3:171146/1‑148 (MQ=255)                                                                      aCATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACg                                                                             <  4:171146/149‑1 (MQ=255)                                                                       cATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGc                                                                            >  3:139761/1‑149 (MQ=255)                                                                         tGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTg                                                                          <  2:161712/149‑1 (MQ=255)                                                                             gcgcAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCAt                                                                       >  5:159706/1‑148 (MQ=255)                                                                                   ccTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCt                                                                <  7:110025/149‑1 (MQ=255)                                                                                       cGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTGCTGTGCCGGTGGCGATACCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCtttt                                                             <  1:93998/148‑1 (MQ=255)                                                                                           aGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTtcgtc                                                        <  1:273619/149‑1 (MQ=255)                                                                                            gCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTtcgtcg                                                       <  7:66931/149‑1 (MQ=255)                                                                                              aCCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGaa                                                     <  1:101366/149‑1 (MQ=255)                                                                                              aCCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGaa                                                     <  4:139761/149‑1 (MQ=255)                                                                                              aCCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTACTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTATTCGTCGaa                                                     >  7:301308/1‑149 (MQ=255)                                                                                                      cAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAggcccactggtccaggtgctgacgcaggctgcgcaccatgtccagggtcagggcattgagaccggctgggcggttcagggtcaggtggccgatctggttgc                                             <  3:2629‑M2/149‑102 (MQ=255)                                                                                                       aGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAggcccactggtccaggtgctgacgcaggctgcgcaccatgtccagggtcagggcattgagaccggctggg                                                                            <  1:185688‑M2/117‑71 (MQ=255)                                                                                                       aGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAggcccactggtccaggtgctgacgcaggctgcgcaccatgtccagggtcagggcattgagaccggctggg                                                                            >  2:185688‑M2/1‑47 (MQ=255)                                                                                                        gTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGAGCGGCGAAGGCCCCAAGTGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACTACAGCTTCAAGGCCGGCGACACGCTGCTTGAAACCTTTTtcgg                                                         >  8:147591/1‑134 (MQ=255)                                                                                                         tGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCt                                          >  7:28466/1‑149 (MQ=255)                                                                                                           ggCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAggcccactggtccaggtgctgacgcaggctgcgcaccatgtccagggtcagggcattgagaccggctgggcggttcagggtcaggtggccgatctggttgcggacc                                        <  6:284656‑M2/149‑107 (MQ=255)                                                                                                            gCCGACAATCCGCAGGTACGCGCCGT‑GTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCACTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCa                                                                        >  5:353443/1‑115 (MQ=255)                                                                                                            gCCGACAATCCGCAGGTACGCGCCGT‑GTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCACTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCa                                                                        <  6:353443/115‑1 (MQ=255)                                                                                                             ccGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGAc                                      <  2:273025/149‑1 (MQ=255)                                                                                                              cGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAggcccactggtccaggtgctgacgcaggctgcgcaccatgtccagggtcagggcattgagaccggctgggcggttcagggtcaggtggccgatctggttgcggacctcg                                     >  5:284656‑M2/1‑40 (MQ=255)                                                                                                                 cAATCCGCAGGTAGGCGCCGTGGTCCTGCGCGGCGAAGGCGCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGGGAGACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCGTCGACCTgg                                  <  8:301308/149‑1 (MQ=255)                                                                                                                    tCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCa                               >  8:330172/1‑149 (MQ=255)                                                                                                                      cGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCAt                              <  6:159706/148‑1 (MQ=255)                                                                                                                       gCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCCTGAAACCtttt                                                             <  4:205993/116‑1 (MQ=255)                                                                                                                       gCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCtttt                                                             >  3:205993/1‑116 (MQ=255)                                                                                                                         aGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCATCCAc                          >  7:273633/1‑149 (MQ=255)                                                                                                                               gcgcCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCATCCACCGCTAc                    >  4:12423/1‑149 (MQ=255)                                                                                                                                cgcCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCATCCACCGCTAcc                   <  6:216247/149‑1 (MQ=255)                                                                                                                                     tGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGc                                                                         >  7:281382/1‑90 (MQ=255)                                                                                                                                     tGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGc                                                                         <  8:281382/90‑1 (MQ=255)                                                                                                                                     tGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTc                                >  1:12047/1‑131 (MQ=255)                                                                                                                                     tGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTc                                <  2:12047/131‑1 (MQ=255)                                                                                                                                       gTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCGAGGCCGGCGacac                                                                              >  4:54575/1‑83 (MQ=255)                                                                                                                                       gTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCGAGGCCGGCGacac                                                                              <  3:54575/83‑1 (MQ=255)                                                                                                                                        tCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCATCCACCGCTACCGCAAGcc            >  8:96728/1‑148 (MQ=255)                                                                                                                                          cTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCATCCACCGCTACCGCAAGCCGa          <  8:28466/148‑1 (MQ=255)                                                                                                                                          cTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCATCCACCGCTACCGCAAGCCGa          >  3:284573/1‑148 (MQ=255)                                                                                                                                                 gcgAAggcccactggtccaggtgctgacgcaggctgcgcaccatgtccagggtcagggcattgagaccggctgggcggttcagggtcaggtggccgatctggttgcggacctcggccagtacatggtctgttgctgccggggtatgagc  >  4:2629‑M2/1‑5 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CGAGGTCCGCAACCAGATCGGCCACCTGACCCTGAACCGCCCAGCCGGTCTCAATGCCCTGACCCT‑GGACATGGTGCGCAGCCTGCGTCAGCACCTGGACCAGTGGGCCGACAATCCGCAGGTACGCGCCGTGGTCCTGCGCGGCGAAGGCCCCAAGGGGTTCTGTGCCGGTGGCGATATCCGCTCGCTGTACGACAGCTTCAAGGCCGGCGACACGCTGCATGAAACCTTTTTCGTCGAAGAGTACGCCCTCGACCTGGTCATCCACCGCTACCGCAAGCCGATACTGGTG  >  NC_002947/3960760‑3961051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.