New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4528871	52 (0.940)	4 (0.080)	3/240	NT	8.2%	coding (471/1173 nt)	PP_4017	hypothetical protein
	?	NC_002947	= 4528919	41 (0.790)					coding (519/1173 nt)	PP_4017	hypothetical protein

AGCTTCGCCGCCCCGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGACCTACTCGGTCGGCTTCCGCGCACCGAGCGCTGCCGAGGTG  >  NC_002947/4528773‑4529066                                                                                                                                                    |                                                                                                                                                    aGCTTCGCCGCCCCGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑Cct                                                                                                                                                   <  5:61562‑M2/149‑3 (MQ=255)  gCTTCGCCGCCCCGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑Cctg                                                                                                                                                  <  8:188839‑M2/149‑4 (MQ=255)  gCTTCGCCGCCCCGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑Cctg                                                                                                                                                  <  2:303715‑M2/149‑4 (MQ=255)      cgccgcCCCGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑Cctggc                                                                                                                                                >  5:96632‑M2/1‑142 (MQ=255)       gccgccCCGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑c                                                                                                                                                     <  5:168761/141‑1 (MQ=255)       gccgccCCGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑c                                                                                                                                                     >  6:168761/1‑141 (MQ=255)         cgccCCGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGt                                                                                                                                           <  6:61562/149‑1 (MQ=255)              cGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAg                                                                                                                                      <  2:122645/149‑1 (MQ=255)                    gCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCagag                                                                                                                                 <  7:262997/148‑1 (MQ=255)                     cAGCGTCGGCGCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAgcg                                                                                                                               >  2:256811/1‑149 (MQ=255)                     cAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAgcg                                                                                                                               >  2:64641/1‑149 (MQ=255)                      aGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAgcgg                                                                                                                              >  7:123441/1‑149 (MQ=255)                      aGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAgcgg                                                                                                                              >  3:109497/1‑149 (MQ=255)                       gCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAgcggc                                                                                                                             <  7:188839/149‑1 (MQ=255)                               ccGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAgcggc                                                                                                                             <  4:272204/141‑1 (MQ=255)                               ccGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAgcggc                                                                                                                             >  3:272204/1‑141 (MQ=255)                               ccGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGAc                                                                                                                     >  3:241732/1‑149 (MQ=255)                                    cTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTATCCCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTg                                                                                                                 <  1:64641/149‑1 (MQ=255)                                            aCTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGc                                                                                                        <  2:250915/149‑1 (MQ=255)                                                       ttCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACGGGCGGAG‑CGTGGCCGAGGGCGAGCAGAGCGGCGAGGGGCCCCGGGGGCCGGGCGCCAGGcgcga                                                                                             >  2:320313/1‑145 (MQ=255)                                                       ttCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGctct                                                                                              <  4:109497/148‑1 (MQ=255)                                                                             aGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTg                                                                                                                 >  3:23887/1‑107 (MQ=255)                                                                             aGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTg                                                                                                                 <  4:23887/107‑1 (MQ=255)                                                                             aGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCAc                                                                       >  3:228673/1‑149 (MQ=255)                                                                                gcAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGGACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACGCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTAc                                                                    <  4:158559/149‑1 (MQ=255)                                                                                 cAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACg                                                                   <  4:175900/149‑1 (MQ=255)                                                                                  aaCTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACgg                                                                  <  8:123441/149‑1 (MQ=255)                                                                                       gAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTgg                                                             <  4:241732/149‑1 (MQ=255)                                                                                           aTCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGt                                                         <  4:228673/149‑1 (MQ=255)                                                                                            tCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑Cctggccgatcttccagttgcgctggccgtggccttgcagcaggaacacatcgtagttgtcgaagtgcgggccgacgctgccacccggggcggc                                                        <  8:294625‑M2/149‑94 (MQ=255)                                                                                            tCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑Cctggccgatcttccagttgcgctggccgtggccttgcagcaggaacacatcgtagttgtcgaagtgcgggccgacgctgccacccggggcgg                                                         <  3:328435‑M2/148‑93 (MQ=255)                                                                                            tCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑Cctggccgatcttccagttgcgctggccgtggccttgcagcaggaacacatcgtagttgtcgaagtgcgggccgacgctgccacccggggcgg                                                         >  4:328435‑M2/1‑56 (MQ=255)                                                                                              ggCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTgg                                                       <  7:262759/148‑1 (MQ=255)                                                                                               gCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAgcg                                                                                                                               <  1:187887/75‑1 (MQ=255)                                                                                               gCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAgcg                                                                                                                               >  2:187887/1‑75 (MQ=255)                                                                                               gCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGt                                                                                                                         >  5:189254/1‑81 (MQ=255)                                                                                               gCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGt                                                                                                                         <  6:189254/81‑1 (MQ=255)                                                                                               gCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGAt                                                     >  1:321081/1‑149 (MQ=255)                                                                                                 cAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGa                                                   >  3:138145/1‑149 (MQ=255)                                                                                                       tgCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑Cctggccgatcttccagttgcgctggccgtggccttgcagcaggaacacatcgtagttgtcgaagtgcgggccgacgctgccacccggggcggcgaagctgatc                                              >  7:294625‑M2/1‑45 (MQ=255)                                                                                                       tgCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCt                                             >  7:91416/1‑149 (MQ=255)                                                                                                          agcagTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGAc                                          >  2:57402/1‑149 (MQ=255)                                                                                                          agcagTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGAc                                          >  2:344010/1‑149 (MQ=255)                                                                                                          agcagTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGAc                                          <  1:57402/149‑1 (MQ=255)                                                                                                            cagTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGAcc                                         >  7:189521/1‑148 (MQ=255)                                                                                                              gTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGACCTa                                       >  4:225797/1‑148 (MQ=255)                                                                                                                 aCAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGc                                               >  1:296452/1‑137 (MQ=255)                                                                                                                 aCAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGc                                               <  2:296452/137‑1 (MQ=255)                                                                                                                           gctgGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGACCTACTCGGTCGGCTTcc                         >  8:70400/1‑149 (MQ=255)                                                                                                                                  cACGCCGACCTGCGTAT‑CCTGGCCGAGTTCAAGCAGAGTGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGTGTGGCCGTGGATGACTGCCTGACCTACtcg                                   >  7:254292/1‑132 (MQ=255)                                                                                                                                  cACGCCGACCTGCGTAT‑CCTGGCCGAGTTCAAGCAGAGTGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGTGTGGCCGTGGATGACTGCCTGACCTACtcg                                   <  8:254292/132‑1 (MQ=255)                                                                                                                                         aCCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGACCTACTCGGTCGGCTTCCGCGCACCGAGCGCt           <  4:138145/149‑1 (MQ=255)                                                                                                                                                  t‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGACCTACTCGGTCGGCTTCCGCGCACCGAGCGCTGCCGAGGTg  <  2:321081/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    AGCTTCGCCGCCCCGGGTGGCAGCGTCGGCCCGCACTTCGACAACTACGATGTGTTCCTGCTGCAAGGCCACGGCCAGCGCAACTGGAAGATCGGCCAGATGTGCAGCAGTGACAGTCCGCTGCTGGAGCACGCCGACCTGCGTAT‑CCTGGCCGAGTTCGAGCAGAGCGGCGAGTGGACCCTGGAGCCCGGCGACATGCTCTACCTGCCACCGCGCCTGGCCCACTACGGCGTGGCCGTGGATGACTGCCTGACCTACTCGGTCGGCTTCCGCGCACCGAGCGCTGCCGAGGTG  >  NC_002947/4528773‑4529066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.