New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4712124 =	45 (0.810)	3 (0.060)	3/244	NT	6.7%	coding (356/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	4712160 =	41 (0.780)					coding (392/2115 nt)	PP_4171	hypothetical protein

CGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCCATGGTACGCGGCTGAAAGTGACACGCGGCCAGGACGGT  >  NC_002947/4712014‑4712308                                                                                                                                                   |                                                                                                                                                     gctgtcggcgggtttgcgggtgaggatgttgaccaccgccatcagcgcgttggcgccatagctgacggtattcgggccacgaaacacctcgatgcgctcgatatcctccaTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATgg                                                                                                                                                    >  1:72473‑M1/111‑149 (MQ=255)       cGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGata                                                                                                                                              <  6:111529/149‑1 (MQ=255)        ggTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGatat                                                                                                                                             <  3:320865/149‑1 (MQ=255)               gTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGa                                                                                                                                          <  4:218490/145‑1 (MQ=255)               gTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGa                                                                                                                                          >  3:218490/1‑145 (MQ=255)                  aTCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATc                                                                                                                                   >  5:69792/1‑149 (MQ=255)                          aCGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGtt                                                                                                                           >  8:4783/1‑149 (MQ=255)                            ggTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTc                                                                                                                         >  6:244605/1‑149 (MQ=255)                                    aCCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGccc                                                                                                                  >  2:72917/1‑148 (MQ=255)                                     ccACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATGGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCg                                                                                                                 >  1:251913/1‑148 (MQ=255)                                      cACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGaa                                                                                                               <  5:244605/149‑1 (MQ=255)                                       aCGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAgcgc                                                                                                                                      >  4:233541/1‑125 (MQ=255)                                       aCGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAgcgc                                                                                                                                      <  3:233541/125‑1 (MQ=255)                                        cGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATa                                                                                                             <  6:69792/149‑1 (MQ=255)                                           cagcaACGTCAACGACGCACGGCCCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCAACGAGGTGTTTCGTGGCCCGAATACCg                                                                                                          >  6:291170/1‑149 (MQ=255)                                             gcaACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTc                                                                                                        <  2:251913/149‑1 (MQ=255)                                               aaCGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCa                                                                                                                                     >  3:108572/1‑118 (MQ=255)                                               aaCGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCa                                                                                                                                     <  4:108572/118‑1 (MQ=255)                                                           gaaCGGCGCATGAAGGTATTGATCGATCGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCACCTTGGCCATGTAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAAAACCGACAGCAATGGCGCCaa                                                                                          >  6:195425/3‑149 (MQ=255)                                                             aCGGCGCATGGAGGTATTGATCGATGGCCGCTCGTTATACCGCGCAGGCCTGGCCACGGTGGTCTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAAcg                                                                                        <  5:195425/149‑1 (MQ=255)                                                                    aTGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGAt                                                                                 <  7:4783/149‑1 (MQ=255)                                                                      gCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATgg                                                                               >  7:21536/1‑149 (MQ=255)                                                                        aGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCg                                                                             >  4:333446/1‑149 (MQ=255)                                                                                  cGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGCGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAAc                                                                    >  2:107403/1‑148 (MQ=255)                                                                                  cGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACa                                                                   >  1:150271/1‑149 (MQ=255)                                                                                    aTGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAAc                                                                    <  8:81041/146‑1 (MQ=255)                                                                                    aTGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAAc                                                                    >  7:81041/1‑146 (MQ=255)                                                                                      ggCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCaa                                                                                          >  8:247845/1‑122 (MQ=255)                                                                                      ggCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCaa                                                                                          <  7:247845/122‑1 (MQ=255)                                                                                       gCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGTAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCAACGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCt                                                               <  5:291170/148‑1 (MQ=255)                                                                                       gCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTc                                                              <  2:56649/149‑1 (MQ=255)                                                                                       gCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTc                                                              <  1:72917/149‑1 (MQ=255)                                                                                                  taCCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACa                                                                   <  2:197591/133‑1 (MQ=255)                                                                                                  taCCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACa                                                                   >  1:197591/1‑133 (MQ=255)                                                                                                     cgcgCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACccgc                                                <  2:150271/149‑1 (MQ=255)                                                                                                          aGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAg                                                                                                                                         <  3:189894/55‑1 (MQ=255)                                                                                                          aGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAg                                                                                                                                         >  4:189894/1‑55 (MQ=255)                                                                                                            ccatggccaaggggatgtcgctccagtccaccgtggccaTGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGc                                         >  1:72473‑M2/40‑149 (MQ=255)                                                                                                                ggccaaggggatgtcgctccagtccaccgtggccaTGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGa                                                                                  <  2:132566‑M2/69‑1 (MQ=255)                                                                                                                ggccaaggggatgtcgctccagtccaccgtggccaTGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGa                                                                                  >  1:132566‑M2/36‑104 (MQ=255)                                                                                                                           aCTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCCATGGTACGCGGCTg                          <  8:21536/149‑1 (MQ=255)                                                                                                                             tGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCCATGGTACGCGGCTGa                         >  3:154084/1‑148 (MQ=255)                                                                                                                                aGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCCATGGTACGCGGCTGAAAGt                     >  8:292021/1‑149 (MQ=255)                                                                                                                                    aCATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCCATGGTACGCGGCTGAAAGTGaca                 >  5:99136/1‑149 (MQ=255)                                                                                                                                       tCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCCATGGTACGCGGCTGAAAGTGACAcgc              >  3:232688/1‑149 (MQ=255)                                                                                                                                                 caTGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCCCCCGCAAACCCGCCGACAGCCATGGTACGCGGCTGAAAGTGACACGCGGCCAGGACg    >  6:216774‑M2/3‑149 (MQ=255)                                                                                                                                                 caTGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCCATGGTACGCGGCTGAAAGTGACACGCGGCCAGGACg    <  4:154084‑M2/147‑1 (MQ=255)                                                                                                                                                   tGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCCATGGTACGCGGCTGAAAGTGACACGCGGCCAGGACGGt  <  7:292021/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGACGCACGGCGCATGCAGGTATTGATCGATGGCCGCTCGGTATACCGCGCAGGCCTGGCCACGGTGGACTGGAGCGACATCCCCTTGGCCATGGAGGATATCGAGCGCATCGAGGTGTTTCGTGGCCCGAATACCGTCAGCTATGGCGCCAACGCGCTGATGGCGGTGGTCAACATCCTCACCCGCAAACCCGCCGACAGCCATGGTACGCGGCTGAAAGTGACACGCGGCCAGGACGGT  >  NC_002947/4712014‑4712308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.