New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4915929 =	54 (0.980)	3 (0.060)	3/240	NT	6.6%	coding (159/768 nt)	ccmC	protoheme IX reservoir complex subunit
	?	NC_002947	4915983 =	35 (0.670)					coding (105/768 nt)	ccmC	protoheme IX reservoir complex subunit

GCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTGCCGGGCTTGAGAGCCCGGGACT  >  NC_002947/4915835‑4916131                                                                                                                                                       |                                                                                                                                                     ctggacgtggttccacaagctgggctccccgaaatggttctatgccatcagcggccgcatgctgccgtggctggccggtgctgccgtgctcctgCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACcagcagc                                                                                                                                                      >  5:238055‑M1/95‑149 (MQ=255)   cccACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACcagcagcag                                                                                                                                                    <  3:192965/149‑1 (MQ=255)            ccGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGAGATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACgg                                                                                                                                            >  6:76423/1‑148 (MQ=255)             cGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACgg                                                                                                                                            >  4:280691/1‑147 (MQ=255)                  aCCGCCAGCAGCACATAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCAcc                                                                                                                                     <  5:76423/149‑1 (MQ=255)                       cagcagCACATAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGgcca                                                                                                                                <  2:124207/149‑1 (MQ=255)                         gcagcaCATAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGgccagc                                                                                                                              >  2:286449/1‑149 (MQ=255)                         gcagcaCATAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGgccagc                                                                                                                              <  4:7683/149‑1 (MQ=255)                               caTAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGgc                                                                                                                        <  3:280691/149‑1 (MQ=255)                                       gACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCg                                                                                                                >  1:345242/1‑149 (MQ=255)                                               cAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGTGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGa                                                                                                        >  6:145196/1‑149 (MQ=255)                                               cAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGa                                                                                                        >  2:33763/1‑149 (MQ=255)                                               cAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGa                                                                                                        >  4:338878/1‑149 (MQ=255)                                                aGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGAt                                                                                                       <  1:160827/149‑1 (MQ=255)                                                       ccgccgGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATGTCCCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCAt                                                                                                  <  1:286449/149‑1 (MQ=255)                                                                 aTGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCg                                                                                      >  4:296225/1‑149 (MQ=255)                                                                            tgatgCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGc                                                                           <  3:296225/149‑1 (MQ=255)                                                                                gCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTtgt                                                                       >  3:307191/1‑149 (MQ=255)                                                                                 cGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTtgt                                                                       <  2:345242/148‑1 (MQ=255)                                                                                 cGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGCCATAGAACCATTTCGGGGAGCCCAGCTtgt                                                                       <  1:33763/148‑1 (MQ=255)                                                                                   gAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTgg                                                                     >  3:289652/1‑148 (MQ=255)                                                                                   gAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGa                                                                    <  1:24133/149‑1 (MQ=255)                                                                                        tGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCgg                                                                                     >  5:284276/1‑127 (MQ=255)                                                                                        tGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCgg                                                                                     <  6:284276/127‑1 (MQ=255)                                                                                        tGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCAc                                                               >  5:245768/1‑149 (MQ=255)                                                                                        tGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCAc                                                               >  7:32793/1‑149 (MQ=255)                                                                                          ttGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGCACCATTTCGGGGAGCCCAGCTTGTGGAAACCCGt                                                             >  8:127802/1‑149 (MQ=255)                                                                                          ttGCCCTGCTGGTAGTCCTGGGGGGAGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCAc                                                               <  2:146576/147‑1 (MQ=255)                                                                                             cccTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTcc                                                           <  4:289652/148‑1 (MQ=255)                                                                                                gctgctggtcggcatcacctggggcctggccttcgccccccaggactaccagcagCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAg                                                         >  5:238055‑M2/56‑149 (MQ=255)                                                                                                  tgctggtcggcatcacctggggcctggccttcgccccccaggactaccagcagCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTtgt                                                                       <  3:52701‑M2/80‑1 (MQ=255)                                                                                                  tgctggtcggcatcacctggggcctggccttcgccccccaggactaccagcagCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTtgt                                                                       >  4:52701‑M2/54‑133 (MQ=255)                                                                                                     GTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGAGAAGCAGCAGGAGGACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGAAGGCTTAGAAGCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCGTatta                                                  <  1:291517‑M1/149‑2 (MQ=255)                                                                                                      TAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTAtttt                                                 >  6:245768‑M1/1‑149 (MQ=255)                                                                                                      TAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTAtttt                                                 >  8:32793‑M1/1‑149 (MQ=255)                                                                                                                  gCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTAc                                      >  1:344819/1‑148 (MQ=255)                                                                                                                   cGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACAt                                    >  1:230144/1‑149 (MQ=255)                                                                                                                        gccaggccCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAgg                               <  2:344819/149‑1 (MQ=255)                                                                                                                         ccaggccCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAggg                              <  4:307191/149‑1 (MQ=255)                                                                                                                          caggccCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGt                             >  7:42040/1‑149 (MQ=255)                                                                                                                               cccAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTg                        >  6:160266/1‑149 (MQ=255)                                                                                                                                     tGATT‑‑CCGACCAGCATCAGGAGCAAGGCATCACCTGCCATCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCTGCTTATTTTCATCAGGGTACATCCAGTTTATTTGCCgtg                   <  2:291517/148‑3 (MQ=255)                                                                                                                                       aTG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTGCCGGGCt                 <  8:42040/148‑1 (MQ=255)                                                                                                                                                 cagcagCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTGCCGGGCTTg               >  2:342096‑M2/7‑142 (MQ=255)                                                                                                                                                 cagcagCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTGCCGGGCTTg               <  1:342096‑M2/136‑1 (MQ=255)                                                                                                                                                     agCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTGCCGGGCTTGAGAGCCCGGGa    <  5:145196‑M2/147‑1 (MQ=255)                                                                                                                                                      gCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTGCCGGGCTTGAGAGCCCGGGAc   >  5:54106‑M2/2‑149 (MQ=255)                                                                                                                                                      gCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTGCCGGGCTTGAGAGCCCGGGAc   <  3:338878‑M2/148‑1 (MQ=255)                                                                                                                                                       cagGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTGCCGGGCTTGAGAGCCCGGGACt  >  3:69758/1‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                                     GCCCCACCACCCCGGCCACCGCCAGCAGCACATAGCAGGACTGCGCCAGCATCGCCGCCGGCACATGGATATAGATGATGCGGAAGCTGTTGCCCTGCTGGTAGTCCTGGGGGGCGAAGGCCAGGCCCCAGGTGATG‑‑CCGACCAGCAGCAGGAGCACGGCAGCACCGGCCAGCCACGGCAGCATGCGGCCGCTGATGGCATAGAACCATTTCGGGGAGCCCAGCTTGTGGAACCACGTCCAGCTTATTTTCATCAGGGTACATCCAGGGTATTTGCCGGGCTTGAGAGCCCGGGACT  >  NC_002947/4915835‑4916131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.