New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5785230 =	32 (0.580)	4 (0.080)	4/244	NT	11.2%	coding (234/1461 nt)	PP_5068	hypothetical protein
	?	NC_002947	5785292 =	33 (0.630)					coding (296/1461 nt)	PP_5068	hypothetical protein

CCCAGGCCGAGCTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGAGTTTCTCGCCTCCGAAGCCCTGCACGCCCTGGGTATC  >  NC_002947/5785145‑5785440                                                                                                                                                    |                                                                                                                                                     cggccgtcacccatgcgggagtagggtgtctggccggcgcccttgaggtgcaggtcccagtgttcgcctgcgtcgttgagcacttCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGaa                                                                                                                                                     >  6:105853‑M1/86‑149 (MQ=255) cccAGGCCGAGCTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGaa                                                                                                                                                     <  3:25653/149‑1 (MQ=255)  ccAGGCCGAGCTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAg                                                                                                                                                    >  5:88982/1‑149 (MQ=255)      gCCGAGCTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCt                                                                                                                                                >  3:90243/1‑149 (MQ=255)       ccGAGCTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTc                                                                                                                                               <  4:90243/149‑1 (MQ=255)           ccatgcgggagtagggtgtctggccggcgcccttgaggtgcaggtcccagtgttcgcctgcgtcgttgagcacttCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGt                                                                                                                                                   <  4:235473‑M1/66‑1 (MQ=255)           ccatgcgggagtagggtgtctggccggcgcccttgaggtgcaggtcccagtgttcgcctgcgtcgttgagcacttCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGt                                                                                                                                                   >  3:235473‑M1/76‑141 (MQ=255)                cGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGAcaca                                                                                                                                      >  8:326746/1‑149 (MQ=255)                 ggTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAg                                                                                                                                     <  7:2699/149‑1 (MQ=255)                                       ggCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCAcc                                                                                                                >  5:11303/1‑148 (MQ=255)                                          cacaAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTgg                                                                                                                          <  8:174161/135‑1 (MQ=255)                                          cacaAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTgg                                                                                                                          >  7:174161/1‑135 (MQ=255)                                           acaAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAg                                                                                                           <  5:47392/149‑1 (MQ=255)                                           acaAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAg                                                                                                           >  4:13038/1‑149 (MQ=255)                                            caAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAgg                                                                                                          <  1:174344/149‑1 (MQ=255)                                            caAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAgg                                                                                                          <  3:13038/149‑1 (MQ=255)                                                 tgtgGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCCCAACGACGCAGGCGa                                                                                                                                 <  6:277532/121‑1 (MQ=255)                                                 tgtgGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCCCAACGACGCAGGCGa                                                                                                                                 >  5:277532/1‑121 (MQ=255)                                                            gCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACAcc                                                                                          >  3:182472/1‑149 (MQ=255)                                                             ccGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACAccc                                                                                         <  6:88982/149‑1 (MQ=255)                                                                      gggCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACACAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTccc                                                                                  <  7:326746/147‑1 (MQ=255)                                                                        gCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCAt                                                                              <  3:226707/149‑1 (MQ=255)                                                                                  acttcggccagcagcaggccacggccgtcgcccagacgtgggttgtacgagccgaactggtggccgAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATgg                                                                            <  4:235473‑M2/75‑1 (MQ=255)                                                                                  acttcggccagcagcaggccacggccgtcgcccagacgtgggttgtacgagccgaactggtggccgAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATgg                                                                            >  3:235473‑M2/67‑141 (MQ=255)                                                                                   ttCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGgcc                                                                   >  2:84959/1‑149 (MQ=255)                                                                                    ttcggccagcagcaggccacggccgtcgcccagacgtgggttgtacgagccgaactggtggccgAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGgccg                                                                  >  6:105853‑M2/65‑149 (MQ=255)                                                                                         CCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGgccgtgccg                                                             <  1:262452‑M1/149‑1 (MQ=255)                                                                                           ACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGccgtgccgtg                                                           >  2:262452‑M1/1‑149 (MQ=255)                                                                                             caGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGtgct                                                         >  3:91781/1‑149 (MQ=255)                                                                                             caGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGtgct                                                         >  8:261175/1‑149 (MQ=255)                                                                                             caGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGtgct                                                         >  2:170075/1‑149 (MQ=255)                                                                                                    gCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCtc                                                   <  3:46850/148‑1 (MQ=255)                                                                                                    gCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCtc                                                   >  4:46850/1‑148 (MQ=255)                                                                                                      tCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCtcgtc                                                >  4:22998/1‑149 (MQ=255)                                                                                                          aCAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGAtt                                            >  5:22265/1‑149 (MQ=255)                                                                                                            aaCCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGCGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTcg                                          >  5:274667/1‑149 (MQ=255)                                                                                                               ccACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTcgc                                         >  8:241569/1‑147 (MQ=255)                                                                                                               ccACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGa                                       <  6:22265/149‑1 (MQ=255)                                                                                                               ccACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGa                                       <  7:241569/149‑1 (MQ=255)                                                                                                                          ggttgtacgagccgaactggtggccgAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGAGTTTCTCGcc                             <  5:105853‑M2/122‑1 (MQ=255)                                                                                                                            aCGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGAGTTTCTCGCCTcc                          <  4:288991/149‑1 (MQ=255)                                                                                                                             cGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCACTCGTCGATTCGCGAGTTTCTCGCCTcc                          >  2:8115/1‑148 (MQ=255)                                                                                                                                  gTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGAGTTTCTCGCCTCCGAAGcc                    <  6:40699/149‑1 (MQ=255)                                                                                                                                   tGGCCTGATGATGGCCGAAGTGATCAACGACGCAGGCGAACACTTGGACCTGAAAATCAAGGGCGCCGGCCAGACACCCAACTCCAGCATGGGTGACGGACGTGCCCTGCTGCGCTCTTCGATTCGAGATTTTCTCCCCTCAGAAcccc                   >  4:105883/1‑149 (MQ=255)                                                                                                                                         gctgctgGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGAGTTTCTCGCCTCCGAAGCCCTGCACg             >  4:272714/1‑149 (MQ=255)                                                                                                                                                 ccgAAGTGCTCAACGACGCAGGCGACCACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGAGTTTCTCGCCTCCGAAGCCCTGCACGCCCTggg      >  8:254888‑M2/4‑148 (MQ=255)                                                                                                                                                    aaGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGAGTTTCTCGCCTCCGAAGCCCTGCACGCCCTGGGTATc  <  6:11303/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CCCAGGCCGAGCTGCCGGTGTTCGCCGAGCTGTTCAGCGGCCACAAACTGTGGGAAGAGGCCGACCCTCGGGCGATGGTTTATTCCGGCCACCAGTTCGGCTCGTACAACCCACGTCTGGGCGACGGCCGTGGCCTGCTGCTGGCCGAAGTGCTCAACGACGCAGGCGAACACTGGGACCTGCACCTCAAGGGCGCCGGCCAGACACCCTACTCCCGCATGGGTGACGGCCGTGCCGTGCTGCGCTCGTCGATTCGCGAGTTTCTCGCCTCCGAAGCCCTGCACGCCCTGGGTATC  >  NC_002947/5785145‑5785440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.