New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5389423 =	7 (0.220)	15 (0.500)	14/276	1.3	69.2%	intergenic (+122/‑198)	dld2/PP_4738	D‑lactate dehydrogenase/hypothetical protein
	?	NC_002947	5453014 =	NA (NA)					intergenic (+27/‑328)	lnt/PP_4791	apolipoprotein N‑acyltransferase/transposase

CTGCGGGGGATTGGCGGGGGTTCCATCGGGATGGTGGCGGGGCGATATTGAAGTAGGGATGGCACCGGCGTTGCCGGTGTTCGCGGGTTTACCGCGCATACGGCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5389575‑5389423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCG  >  NC_002947/5453014‑5453160                                                                                                                                                                                                                                                                                                              cttggtGGGATTGGGGGGTGTTCAATCGGGCAGTTGGCGGGGCGATATTGAAGTAGGGATGGCACCGGCGTTGCCGGTGTTCGCTCTTTTACCGCGCATACGTCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGT                                                                                                                                                          <  4:97847/142‑1                      TCCATCGGGATGGTGGCGGGGCGATATTGAAGTAGGGATGGCACCGGCGTTGCCGGTGTTCGCGGGTTTACCGCGCATACGGCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCC                                                                                                                                     >  8:35283/1‑148                         ATCGGGATGGTGGCGGGGCGATATTGAAGTAGGGATGGCACCGGCGTTGCCGGTGTTCGCGGGTTTACCGCGCATACGGCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGG                                                                                                                                  >  4:40044/1‑148                               ATGGTGGCGGGGCGATATTGAAGTAGGGATGGCACCGGCGTTGCCGGTGTTCGCGGGTTTACCGCGCATACGGCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGC                                                                                                                            >  5:84600/1‑148                                                   AAGTAGGGATGGCACCGGCGTTGCCGGTGTTCGCGGGTTTACCGCGCATACGGCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGA                                                                                                         <  1:53638/147‑1                                                                    GCGTTGCCGGTGTTCGCGGGTTTACCGCGCATACGGCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTC                                                                                       <  4:35828/148‑1                                                                           CGGTGTTCGCGGGTTTACCGCGCATACGGCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCG                                                                                >  6:23864/1‑148                                                                                              GCGCATACGGCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAA                                                             <  8:131213/148‑1                                                                                                       GCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCG                                                    <  3:40044/148‑1                                                                                                                      CCACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGG                                     >  1:50376/1‑148                                                                                                                       CACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGC                                    >  3:125234/1‑148                                                                                                                        ACCGATGTGTGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAAAAAAGGCGGTTGGCCCGGTAGGGCC                                   >  8:157057/1‑148                                                                                                                                 TGGGCACCACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAACGGCGGTTGGCCCGGTAGGGCCAGCCGCCTT                          <  1:75857/148‑1                                                                                                                                        CACCAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTT                   <  5:170294/148‑1                                                                                                                                           CAATCTGCGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTT                <  4:125234/148‑1                                                                                                                                                ccctTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGG            <  6:91933/143‑1                                                                                                                                                  CGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTC         <  3:60504/148‑1                                                                                                                                                      GGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGT     >  1:10215/1‑148                                                                                                                                                      GGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGT     >  5:131298/1‑148                                                                                                                                                       GAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTG    >  6:87304/1‑148                                                                                                                                                       GAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGT     <  2:50376/147‑1                                                                                                                                                        AGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGC   >  4:66808/1‑148                                                                                                                                                         GATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTTAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCATTGTTAGGGTTAGTGTGCG  >  4:126208/1‑148                                                                                                                                                         GATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCG  >  4:18097/1‑148                                                                                                                                                         GATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCG  >  7:47317/1‑148                                                                                                                                                                                                                                                                                                              CTGCGGGGGATTGGCGGGGGTTCCATCGGGATGGTGGCGGGGCGATATTGAAGTAGGGATGGCACCGGCGTTGCCGGTGTTCGCGGGTTTACCGCGCATACGGCGGGCTGTGTACACCCACCGATGTGTGGGCACCACCAATCTGCGTAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5389575‑5389423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCG  >  NC_002947/5453014‑5453160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.