New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 599083033 (1.040)4 (0.140) 4/266 3.7 11.2% intergenic (‑164/‑65) ycaC‑III/PP_5249 putative hydrolase/LysR family transcriptional regulator
?NC_002947 = 5990850 33 (1.130)intergenic (‑184/‑45) ycaC‑III/PP_5249 putative hydrolase/LysR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGG  >  NC_002947/5990685‑5990973
                                                                                                                                                 |                                                                                                                                               
ttATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCgg                                                                                                                                               <  8:75403/148‑1 (MQ=255)
 tATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGc                                                                                                                                              <  1:27092/148‑1 (MQ=255)
    gAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCt                                                                                                                                             >  7:96854/1‑146 (MQ=255)
     aaCTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTaaa                                                                                                                                          >  8:61327/1‑148 (MQ=255)
             aGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTc                                                                                                                                   <  2:57316/147‑1 (MQ=255)
              gCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCt                                                                                                                                 <  6:24483/148‑1 (MQ=255)
                                         gCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAAc                                                                                                      >  4:145576/1‑148 (MQ=255)
                                                   aaaTCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATAccc                                                                                             <  3:164028/147‑1 (MQ=255)
                                                    aaTCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATAccc                                                                                             >  3:12028/1‑146 (MQ=255)
                                                       catcaCCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGgaga                                                                                        <  3:95122/148‑1 (MQ=255)
                                                         tcaCCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGAc                                                                                       >  7:116934/1‑147 (MQ=255)
                                                                 gcggcgGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCAt                                                                                <  1:171227/146‑1 (MQ=255)
                                                                              gCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAAc                                                                  <  3:45364/147‑1 (MQ=255)
                                                                               cAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTc                                                                >  7:1485/1‑148 (MQ=255)
                                                                                    tCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCctct                                                           >  5:135180/1‑148 (MQ=255)
                                                                                          tttAGCGTTCTGATTTATGAACGATGGATTTGTAGCGGCTGTGTCGGCCTCTTCGAGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGTCAACCCAATACCAGGAGACCGATCATTTGAAGACCTCAAATCCCTCtactac                                                      >  3:18841/1‑147 (MQ=255)
                                                                                                        ttATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGgtcgtc                                       <  3:145576/148‑1 (MQ=255)
                                                                                                            gAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAAc                                   >  7:33135/1‑148 (MQ=255)
                                                                                                             aaCGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACa                                  >  6:157250/1‑148 (MQ=255)
                                                                                                               cGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATg                                <  1:61969/148‑1 (MQ=255)
                                                                                                                gATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATgg                               >  6:6571/1‑148 (MQ=255)
                                                                                                                 aTGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATggc                              <  7:70163/148‑1 (MQ=255)
                                                                                                                 aTGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATggc                              <  3:57246/148‑1 (MQ=255)
                                                                                                                   ggATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATggcgg                            <  1:157684/148‑1 (MQ=255)
                                                                                                                      tttGTAGGGGCTGTGTCGGCCTCTTCGCGGCGAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACCGGCAACCCAATACCCGGCGACCGATCATTGGAAGACCTCAACTCCCTCAACTACTTCACCCACGTCGACGAACATggaggcaa                         >  7:37242/1‑146 (MQ=255)
                                                                                                                          tAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGc                      <  6:53448/147‑1 (MQ=255)
                                                                                                                              ggCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCACCCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCccgg                 >  7:115373/1‑148 (MQ=255)
                                                                                                                                  gtgtCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCccggccgg             >  5:96840/1‑148 (MQ=255)
                                                                                                                                   tgtCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCcggg            >  2:155484/1‑148 (MQ=255)
                                                                                                                                        gCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGCCCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCgggcgggc       >  2:26272/1‑148 (MQ=255)
                                                                                                                                           tctTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGCCCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCt    >  3:84927/1‑148 (MQ=255)
                                                                                                                                            ctTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCATGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTg   <  2:62396/148‑1 (MQ=255)
                                                                                                                                             ttCGCGGCTAAAGCCGCTCCTACGCGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGGTCATTGGAAGCCCTCAACTCCATCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTgg  >  3:87035/1‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                               
TTATGAACTTTTCAGCAATCCGGGGTGTTTCGCGTTGATGGGCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGG  >  NC_002947/5990685‑5990973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.