New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5990830	33 (1.040)	4 (0.140)	4/266	3.7	11.2%	intergenic (‑164/‑65)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator
	?	NC_002947	= 5990850	33 (1.130)					intergenic (‑184/‑45)	ycaC‑III/PP_5249	putative hydrolase/LysR family transcriptional regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCA  >  NC_002947/5990726‑5990994                                                                                                                             |                                                                                                                                                 gCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAAc                                                                                                                           >  4:145576/1‑148 (MQ=255)           aaaTCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATAccc                                                                                                                  <  3:164028/147‑1 (MQ=255)            aaTCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATAccc                                                                                                                  >  3:12028/1‑146 (MQ=255)               catcaCCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGgaga                                                                                                             <  3:95122/148‑1 (MQ=255)                 tcaCCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGAc                                                                                                            >  7:116934/1‑147 (MQ=255)                         gcggcgGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCAt                                                                                                     <  1:171227/146‑1 (MQ=255)                                      gCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAAc                                                                                       <  3:45364/147‑1 (MQ=255)                                       cAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTc                                                                                     >  7:1485/1‑148 (MQ=255)                                            tCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCctct                                                                                >  5:135180/1‑148 (MQ=255)                                                  tttAGCGTTCTGATTTATGAACGATGGATTTGTAGCGGCTGTGTCGGCCTCTTCGAGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGTCAACCCAATACCAGGAGACCGATCATTTGAAGACCTCAAATCCCTCtactac                                                                           >  3:18841/1‑147 (MQ=255)                                                                ttATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGgtcgtc                                                            <  3:145576/148‑1 (MQ=255)                                                                    gAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAAc                                                        >  7:33135/1‑148 (MQ=255)                                                                     aaCGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACa                                                       >  6:157250/1‑148 (MQ=255)                                                                       cGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATg                                                     <  1:61969/148‑1 (MQ=255)                                                                        gATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATgg                                                    >  6:6571/1‑148 (MQ=255)                                                                         aTGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATggc                                                   <  3:57246/148‑1 (MQ=255)                                                                         aTGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATggc                                                   <  7:70163/148‑1 (MQ=255)                                                                           ggATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATggcgg                                                 <  1:157684/148‑1 (MQ=255)                                                                              tttGTAGGGGCTGTGTCGGCCTCTTCGCGGCGAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACCGGCAACCCAATACCCGGCGACCGATCATTGGAAGACCTCAACTCCCTCAACTACTTCACCCACGTCGACGAACATggaggcaa                                              >  7:37242/1‑146 (MQ=255)                                                                                  tAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGc                                           <  6:53448/147‑1 (MQ=255)                                                                                      ggCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCACCCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCccgg                                      >  7:115373/1‑148 (MQ=255)                                                                                          gtgtCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCccggccgg                                  >  5:96840/1‑148 (MQ=255)                                                                                           tgtCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCcggg                                 >  2:155484/1‑148 (MQ=255)                                                                                                gCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGCCCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCgggcgggc                            >  2:26272/1‑148 (MQ=255)                                                                                                   tctTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGCCCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCt                         >  3:84927/1‑148 (MQ=255)                                                                                                    ctTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCATGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTg                        <  2:62396/148‑1 (MQ=255)                                                                                                     ttCGCGGCTAAAGCCGCTCCTACGCGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGGTCATTGGAAGCCCTCAACTCCATCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTgg                       >  3:87035/1‑148 (MQ=255)                                                                                                          ggCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATg                  >  8:102916/1‑148 (MQ=255)                                                                                                                 gCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGt           <  5:59200/148‑1 (MQ=255)                                                                                                                  ccGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTc          <  8:33135/148‑1 (MQ=255)                                                                                                                        cTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAAc     >  6:83384/1‑147 (MQ=255)                                                                                                                           cGAGAGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTAGTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCa  <  8:37242/147‑1 (MQ=255)                                                                                                                            gAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCa  <  1:155484/146‑1 (MQ=255)                                                                                                                             |                                                                                                                                                 GCACAGATTAAAATCATCACCTTTGCGGCGGTAGTTAGCAGAATCTGGCTTTAGCGTTCTGATTTATGAACGATGGATTTGTAGGGGCTGTGTCGGCCTCTTCGCGGCTAAAGCCGCTCCTACGAGCGAAGAGGCCGGTACAGGCAACCCAATACCCGGAGACCGATCATTGGAAGACCTCAACTCCCTCTACTACTTCACCCAGGTCGTCGAACATGGCGGCTTCGCCCCGGCCGGGCGGGCGCTGGACATGCCCAAGTCAAAACTCA  >  NC_002947/5990726‑5990994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.