| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2664008 = | 45 (0.770) | 5 (0.100) | 5/234 | 6.7 | 13.7% | intergenic (+33/‑130) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase |
| ? | NC_002947 | 2664089 = | 26 (0.530) | intergenic (+114/‑49) | prpC/acnA‑II | methylcitrate synthase/aconitate hydratase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2664171‑2664008‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCC > NC_002947/2664089‑2664227 TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCG < 5:252429/149‑1 GCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGCGTCAGCAGGTGCACAGAGGTTAAAAGGCCGGGTGCATACGCcg > 4:224452/1‑147 CCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGG < 1:153383/148‑1 AGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCC > 5:77025/1‑149 GTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTTCCCGCGCATTCGTCAGCACGTGCACAGTGGGTAGAAGGGCCGGTGCATTCGCGGGCACGCCCG > 7:99399/1‑149 TCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGC > 1:224340/1‑130 TCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGC < 2:224340/130‑1 CCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCAC > 8:98432/1‑141 CCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCAC < 7:98432/141‑1 CCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCGGAATCCTGTGAACGAGCCTGATTCCATGATGACCGCTGCAGAGCGCCAGCACCTGCCGGGC > 8:294681/1‑149 GCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACC > 4:237530/1‑139 GCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACC < 3:237530/139‑1 GCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGA > 2:211812/1‑149 ggaGCGGGCGTGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATC > 6:261748/4‑148 CGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAA < 1:186068/148‑1 GCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAG < 2:315470/135‑1 GCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAG > 1:315470/1‑135 CCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCC > 5:282999/1‑148 TGCCTGGCAGGTGCTTGCGGTATGCAGTGTTCATCATGGAATCAGGCTCGGTCACAGGATTCGGAAGGTTTCACCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGCGTCAGCAGGTGCACAGTGGTTACAAGGCCGGGTGCATTCGCGGGCACGCCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2664171‑2664008‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcattcgcgggcacgcccgctcccACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGCATACCGCAAGCACCTGCCAGGCACCGACCTGGACTACTTCGACGCCCGCGCGGCGGTCGAGGCGATCAAGCCCGGCGCC > NC_002947/2664089‑2664227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |