New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2664008 =	45 (0.770)	5 (0.100)	5/234	6.7	13.7%	intergenic (+33/‑130)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
	?	NC_002947	2664089 =	26 (0.530)					intergenic (+114/‑49)	prpC/acnA‑II	methylcitrate synthase/aconitate hydratase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGACCGGCTGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGC  >  NC_002947/2663860‑2664148                                                                                                                                                     |                                                                                                                                              tGACCGGCTGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAg                                                                                                                                               >  2:180961/1‑149 (MQ=255)  gACCGGCTGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTATCCCTTCAgg                                                                                                                                              >  6:89911/1‑149 (MQ=255)   aCCGGCTGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAgg                                                                                                                                              <  5:87603/148‑1 (MQ=255)   aCCGGCTGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAgg                                                                                                                                              >  2:45490/1‑148 (MQ=255)            gcggcgCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGt                                                                                                                                    <  1:180961/149‑1 (MQ=255)              ggcgCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGc                                                                                                                                  <  5:162428/149‑1 (MQ=255)                 gcACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCgg                                                                                                                                        >  8:248100/1‑140 (MQ=255)                 gcACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCgg                                                                                                                                        <  7:248100/140‑1 (MQ=255)                    cGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGa                                                                                                                            <  4:332816/149‑1 (MQ=255)                           gAGCATCGCGCCAACAACAGCATCTTCCGCCCGAGCGCCGAGTATGTCGTCGTCGAACAGCTCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCAc                                                                                                                     <  8:276626/148‑1 (MQ=255)                                gcgcgcCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGcc                                                                                                               <  7:54091/149‑1 (MQ=255)                                  gcgcCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCtt                                                                                                             <  2:39572/149‑1 (MQ=255)                                    gcCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTg                                                                                                            >  7:38582/1‑148 (MQ=255)                                     ccAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTa                                                                                                          <  4:82474/149‑1 (MQ=255)                                      caacaaCCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCCCCA‑ATGCCCCCGGCCATgaa                                                                                                          >  2:259521/1‑146 (MQ=255)                                      caacaaCCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCCGGCGTGCCCGCGA‑ATGCACCCGGGCATGTa                                                                                                          >  3:101763/1‑148 (MQ=255)                                       aacaacCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAAc                                                                                                        <  7:246380/149‑1 (MQ=255)                                         caacCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGC‑AAGCCCCCGGCCGTGTTAccc                                                                                                      >  2:186068/1‑148 (MQ=255)                                         caacCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCa                                                                                                      <  1:172163/149‑1 (MQ=255)                                           acCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACt                                                                                                    <  3:177103/149‑1 (MQ=255)                                             cGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACtgt                                                                                                  >  6:80547/1‑149 (MQ=255)                                                                ccGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTcg                                                                               <  5:80547/149‑1 (MQ=255)                                                                   aGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATg                                                                                                                        >  4:331983/1‑105 (MQ=255)                                                                   aGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATg                                                                                                                        <  3:331983/105‑1 (MQ=255)                                                                    gTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACct                                                                                            >  6:114298/1‑132 (MQ=255)                                                                    gTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACct                                                                                            <  5:114298/132‑1 (MQ=255)                                                                       tGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCAc                                                                        <  6:132251/149‑1 (MQ=255)                                                                          cGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCAGCGA‑AAGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCTCGGGCACGcc                                                                     >  3:224452/1‑149 (MQ=255)                                                                           ggCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGACATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGc                                                                      <  1:259521/148‑1 (MQ=255)                                                                              gTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCt                                                                 >  5:338431/1‑149 (MQ=255)                                                                                   aCAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑AAGCACCCGGCCATGTAACCACTGTGCACCTGCTGACGCATTAGCCGGCACGcccccgaccc                                                             >  3:54611/1‑141 (MQ=255)                                                                                      gcgcCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCgg                                                                            <  3:61226/130‑1 (MQ=255)                                                                                      gcgcCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCgg                                                                            >  4:61226/1‑130 (MQ=255)                                                                                            gTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGt                                                   <  1:45490/149‑1 (MQ=255)                                                                                                   ccGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCCCCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCCCTCCCACAGGTACGGTGAAACCt                                            >  6:77025/1‑149 (MQ=255)                                                                                                               cgcTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCAACCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTAGCGGGCACGCCCGCTCCCACAGGTAAGGTGAAAACTTc                                          >  7:183954/1‑139 (MQ=255)                                                                                                                    aaTAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGcc                                                                     <  3:275014/107‑1 (MQ=255)                                                                                                                    aaTAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCCGGCACGCCCGCTCCCACAGGTACGGTGGAACCTTCCGAATCCTGTGAcc                            >  3:284899/1‑148 (MQ=255)                                                                                                                          tataGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACAGTGCACCTGCTGACGCATTAGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCt                      >  7:108708/1‑148 (MQ=255)                                                                                                                                 agGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCCCCCGGCCGTGTAACCACTGTGCACCAGCTGACGCCTTCGCGGGCACGCCCGCTCCCCCACGTACGGTGACACCTTACGAATCCTGTGACCGAGCCAGATTACat              >  6:100946/1‑149 (MQ=255)                                                                                                                                    cAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCatgat           <  6:338431/149‑1 (MQ=255)                                                                                                                                          gTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCatga            >  3:273789/1‑142 (MQ=255)                                                                                                                                          gTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCatga            <  4:273789/142‑1 (MQ=255)                                                                                                                                              gcgttGCGGGAGCGGGCGTGCCGGGTA‑ATGCAGCCGCCGTTGTAACCTCTGTGCACCTCCTGACGCATTCGCGGGCAGGCCCGCTCCGACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGGCTGATTCCATGATGAACACTGc  <  5:89911/145‑1 (MQ=255)                                                                                                                                              cccTTGAGGGTGCGGGCGTGCCGGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGc  <  7:173657/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                              TGACCGGCTGGGCGGCGCACGTCTTCGAGCAGCGCGCCAACAACCGCATCATCCGCCCGAGCGCCGAGTATGTCGGCGTCGAACAGCGCCAGTTCGTGCCGATCGAGCAGCGCTGAATAGCTATAGAGAGGCAACCCGTTTCCCTTGAGGGAGCGGGCGTGCCCGCGA‑ATGCACCCGGCCTTGTAACCACTGTGCACCTGCTGACGCATTCGCGGGCACGCCCGCTCCCACAGGTACGGTGAAACCTTCCGAATCCTGTGACCGAGCCTGATTCCATGATGAACACTGC  >  NC_002947/2663860‑2664148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.