| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 486412 = | 11 (0.210) | 3 (0.070) | 3/222 | NT | 12.6% | intergenic (‑98/+100) | apaG/rsmA | Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A |
| ? | NC_002947 | 486501 = | 32 (0.690) | intergenic (‑187/+11) | apaG/rsmA | Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A | |||||
CTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/486571‑486412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccggTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGC > NC_002947/486501‑486648 CTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGC < 1:265238/149‑1CTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGC > 2:265238/1‑149CTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCATGTAGGAGCGGGTTTACCCG > 7:301709/1‑148 CCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCATCAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGA < 7:164788/149‑1 CCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGA < 2:329396/149‑1 CCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGA < 6:190711/149‑1 GTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGA < 8:273106/136‑1 GTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGA > 7:273106/1‑136 GCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGA > 4:24365/1‑107 CTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTG > 5:328659/1‑122 CTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTG < 6:328659/122‑1 TTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTC > 7:248382/1‑149 CCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGC > 2:167844/1‑99 GAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATG < 7:49209/149‑1 CGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTTTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGGGGCGCTGTCCAGCAGGCCTTTCATGGTTTT < 8:248382/149‑1 GTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGC > 5:364719/1‑149 GTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCG < 2:346074/121‑1 GTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCG > 1:346074/1‑121 CTCGACCTGGCAGCCTTCGTGCGCCTGGCTGACCAACTGGCGGATCAGCAACAAGCCTGATTTAGCCCGTACCGGCCTCTTCGCGGGCCACAAGGGATCGCACAACCCTCAAATCCTGTGCGACCCCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/486571‑486412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgaagaggccggTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGC > NC_002947/486501‑486648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |