New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	486412 =	11 (0.210)	3 (0.070)	3/222	NT	12.6%	intergenic (‑98/+100)	apaG/rsmA	Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A
	?	NC_002947	486501 =	32 (0.690)					intergenic (‑187/+11)	apaG/rsmA	Co(2+)/Mg(2+) efflux protein/ribosomal RNA small subunit methyltransferase A

CAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACG  >  NC_002947/486264‑486554                                                                                                                                                     |                                                                                                                                               gcaacaccatgaaaggcctgctggacagcgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtac                                                                                                                                                >  5:364719‑M1/149‑149 (MQ=255)   aaaaccatgaaaggcctgctggacagcgcccccatcgaggctgctggcgttgatggcagcctgcgccctgaaaagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCg                                                                                                                                              <  8:248382‑M1/3‑1 (MQ=255)        catgaaaggcctgctggacagcgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCctc                                                                                                                                         <  7:49209‑M1/8‑1 (MQ=255)                             cgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtac                                                                                                                                                <  2:346074‑M1/1‑1 (MQ=255)                             cgccgccatcgaggctgctggcgttgatggcagcctgcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtac                                                                                                                                                >  1:346074‑M1/121‑121 (MQ=255)                                                        gggCCTTGAGCGAACTGACGCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTGGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGCGGTCGCACAGGATTTGTGGGt                                                                                         >  8:301709/1‑149 (MQ=255)                                                                 gcgccctgaacagctcgacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCCTCTTCGCgg                                                                                                                                  >  2:167844‑M1/85‑99 (MQ=255)                                                                 gCGAACTGACGCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATc                                                                                >  3:81988/1‑149 (MQ=255)                                                                                 gacctggcagccttcgtgcgcctggctgaccaactggcggatcagcaacaagcctgatttagcccgtaCCGGCCTCTTCGCGGGTAAACCCGCGCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGaa                                                                >  7:248382‑M1/69‑149 (MQ=255)                                                                                                     aggggggagggCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTG‑ATGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGACGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTaaag                                            >  8:306312/1‑147 (MQ=39)                                                                                                               caactggcggatcagcaacaagcctgatttagcccgtaCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAagag                                                             >  5:328659‑M1/39‑122 (MQ=255)                                                                                                               caactggcggatcagcaacaagcctgatttagcccgtaCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAagag                                                             <  6:328659‑M1/84‑1 (MQ=255)                                                                                                                ccAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCttgtt                                  >  4:30537/1‑148 (MQ=255)                                                                                                                     ggTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGAt                            >  3:128982/1‑149 (MQ=255)                                                                                                                           cGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGc                        >  6:24892/1‑147 (MQ=255)                                                                                                                               cTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTg                  <  3:30537/149‑1 (MQ=255)                                                                                                                                ttGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTgg                 >  8:12491/1‑149 (MQ=255)                                                                                                                                       gggTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCCCCAGTTGGTCAGc            >  4:92142/1‑147 (MQ=255)                                                                                                                                            ttgtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGgcg      >  7:90356/1‑148 (MQ=255)                                                                                                                                               tCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCAc   <  8:90356/148‑1 (MQ=255)                                                                                                                                                 tgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACg  >  6:310015/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                               CAGGTAGCGGGTCACGACGCTGACGTCGATTTGATAGCGGGGGTCGGACATGCAAGGGCCTTGGGCGAACTGACGCAATAATGCAGTCTAGGCCATTGGGAGGGGGGAGGGCCAGCGGTGATCGGGCTTGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACG  >  NC_002947/486264‑486554

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.