New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1003693	62 (1.170)	4 (0.080)	4/238	NT	7.8%	coding (200/486 nt)	PP_0865	ECF subfamily RNA polymerase sigma‑24 factor
	?	NC_002947	= 1003761	37 (0.750)					coding (268/486 nt)	PP_0865	ECF subfamily RNA polymerase sigma‑24 factor

GGCACCTGGACGCGCAAGCTGCGCAGTCGTCAGCAGGCCGAGGACCTCACCCACGATGCCTTTGTCCGGGTACTGGAAACCCCGCGCGAGCAGGTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGGCTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1003539‑1003693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttccgGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCCACAGCGATATTGCGCGCAGCCTGATGCAGGTAGGCGCGTGGCTGCTCAACCTGCTCGCGCGGGGTTTC  <  NC_002947/1003761‑1003614                                                                                                                                                                                                                                                                                                                 GGCACCTGGACGCGCAAGCTGCGCAGTCGTCAGCAGGCCGAGGACCTCACCCACGATGCCTTTGTCCGGGTACTGGAAACCCCGCGCGAGCAGGTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGG                                                                                                                                                            >  4:40563/1‑149  GCACCTGGACGCGCAAGCTGCGCAGTCGTCAGCAGGCCGAGGACCTCACCCACGCTGCCTTTGTCCGGGTACTGGCAACCCCGCGCGAGCAGGTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAAAATCGCTGTGGATGGC                                                                                                                                                           >  5:87666/1‑149     CCTGGACGCGCAAGCTGCGCAGTCGTCAGCAGGCCGAGGACCTCACCCACGATGCCTTTGTCCGGGTACTGGAAACCCCGCGCGAGCAGGTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGGCTTC                                                                                                                                                        >  7:173811/1‑149      CTGGACGCGCAAGCTGCGCAGTCGTCAGCAGGCCGAGGACCTCACCCACGATGCCTTTGTCCGGGTACTGGAAACCCCGCGCGAGCAGGTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGGCTTCC                                                                                                                                                       <  8:173811/149‑1                           TCGTCAGCAGGCCGAGGACCTCAACAACGATGCATTTGTCCGGGTACTGGAAACCCCGCGCAAGCAGGTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGGCTTCCGGGTCGCCACTGCCGGTTGCG                                                                                                                                  >  7:51838/1‑149                                              CTCACCCACGATGCCTTTGTCCGGGTACTGGAAACCCCGCGCGAGCAGCTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGGCTTCCGGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCC                                                                                                               >  3:151725/1‑149                                                                                    GCGCGAGCAGGTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGGCTTCCGGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCA                                                                         <  4:151725/149‑1                                                                                       CGAGCAGGTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGGCTTCCGGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCC                                                                      <  8:51838/149‑1                                                                                                   GCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGG                                                                                                                                                            >  7:123234/1‑51                                                                                                   GCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGG                                                                                                                                                            <  8:123234/51‑1                                                                                                                                                    GGCTTCCGGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCCACAGCGATATTGCGCGCAGCCTGATGCAGGTAGGCGCGTGGCTGCTCAACCTGCTCGCGCG         >  2:225825/1‑149                                                                                                                                                       TTCCGGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCCACAGCGATATTGCGCGCAGCCTGATGCAGGTAGGCGCGTGGCTGCTCAACCTGCTCGCGCGGG       >  7:212941/1‑148                                                                                                                                                         CCGGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCCACAGCGATATTGCGCGCAGCCTGATGCAGGTAGGCGCGTGGCTGCTCAACCTGCTCGCGCGGGG      <  8:118841/147‑1                                                                                                                                                         CCGGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCCACAGCGATATTGCGCGCAGCCTGATGCAGGTAGGCGCGTGGCTGCTCAACCTGCTCGCGCGGG       <  8:212941/146‑1                                                                                                                                                          CGGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCCACAGCGATATTGCGCGCAGCCTGATGCAGGTAGGCGCGTGGCTGCTCAACCTGCTCGCGCGGGGTTT   >  4:54236/1‑149                                                                                                                                                           GGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCCACAGCGATATTGCGCGCAGCCTGATGCAGGTAGGCGCGTGGCTGCTCAACCTGCTCGCGCGGGGTTTC  <  1:132926/149‑1                                                                                                                                                           GGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCCACAGCGATATTGCGCGCAGCCTGATGCAGGTAGGCGCGTGGCTGCTCAACCTGCTCGCGCGGGGTTTC  >  6:159367/1‑149                                                                                                                                                                                                                                                                                                                 GGCACCTGGACGCGCAAGCTGCGCAGTCGTCAGCAGGCCGAGGACCTCACCCACGATGCCTTTGTCCGGGTACTGGAAACCCCGCGCGAGCAGGTTGAGCAGCCACGCGCCTACCTGCATCAGGCTGCGCGCAATATCGCTGTGGATGGCTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1003539‑1003693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttccgGGTCGCCACTGCCGGTTGCGCCTTCTTCGAAGGCTTCCCGCTCCAGGGCCTGGCGCCGGTCTTCGCGACGGAAGCCATCCACAGCGATATTGCGCGCAGCCTGATGCAGGTAGGCGCGTGGCTGCTCAACCTGCTCGCGCGGGGTTTC  <  NC_002947/1003761‑1003614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.