New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1090127 =	56 (1.060)	3 (0.060)	3/238	NT	5.5%	coding (988/1380 nt)	fumC‑I	class 2 fumarate hydratase
	?	NC_002947	1090165 =	51 (1.030)					coding (1026/1380 nt)	fumC‑I	class 2 fumarate hydratase

TTTGTCGGCCAGCAAGCGGCTGACATTGGCCATCAGCTCGATGCTTTCCAGCAGGTTGCGGGCGATCACCGGCAGCATCACGTTCAGCTCGAAGTTACCGGCTTGACCTGCGACGGCGATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1090282‑1090127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaccatCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTCAAGGTCAACGAAGA  >  NC_002947/1090165‑1090311                                                                                                                                                                                                                                                                                                                 TTTGTCGGCCAGCAAGCGGCTGACATTGGCCATCAGCTCGATGCTTTCCAGCAGGTTGCGGGCGATCACCGGCAGCATCACGTTCAGCTCGAAGTTACCGGCTTGACCTGCGACGGCGATGGTCGCGTCGTTGCCAATCACTTGGGCGG                                                                                                                                                            >  6:299009/1‑149       GGCCAGCAAGCGGCTGACATTGGCCATCAGCTCGATGCTTTCCAGCAGGTTGCGGGCGATCACCGGTAGCATCACGTTCAGCTCGAAGTTACCGGCTTGACCTGCGACGGCGATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGACCA                                                                                                                                                      >  4:124154/1‑149       GGCCAGCAAGCGGCTGACATTGGCCATCAGCTCGATGCTTTCCAGCAGGTTGCGGGCGATCACCGGCAGCATCACGTTCAGCTCGAAGTTACCGGCTTGACCTGCGACGGCGATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGACCA                                                                                                                                                      >  1:305552/1‑149          CAGCAAGCGGCTGACATTGGCCATCAGCTCGATGCTTTCCAGCAGGTTGCGGGCGATCACCGGCAGCATCACGTTCAGCTCGAAGTTACCGGCTTGACCTGCGACGGCGATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGAtatcg                                                                                                                                                    >  3:282342/1‑143                     TGACATTGGCCATCAGCTCGATGCTTTCCAGCAGGTTGCGGGCGATCACCGGCAGCATCACGTTCAGCTCGAAGTTACCGGCTTGACCTGCGACGGCGATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGA                                                                                                                                                         <  3:108859/132‑1                     TGACATTGGCCATCAGCTCGATGCTTTCCAGCAGGTTGCGGGCGATCACCGGCAGCATCACGTTCAGCTCGAAGTTACCGGCTTGACCTGCGACGGCGATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGA                                                                                                                                                         >  4:108859/1‑132                                                                                                                    GCGATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCT                                         >  3:93211/1‑149                                                                                                                       ATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTG                                           >  5:297777/1‑144                                                                                                                       ATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTG                                           <  6:297777/144‑1                                                                                                                                                     GCGACCATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTCAAGGTCAA        >  8:171334/1‑149                                                                                                                                                          CATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTCAAGGTCAACGAAG   <  8:285016/149‑1                                                                                                                                                          CATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAG                              <  3:148147/122‑1                                                                                                                                                          CATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAG                              >  4:148147/1‑122                                                                                                                                                           ATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTCAAGGTCAACGAAGA  >  3:216661/1‑149                                                                                                                                                           ATCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTCAAGGTCAACGAAGA  >  4:276672/1‑149                                                                                                                                                                                                                                                                                                                 TTTGTCGGCCAGCAAGCGGCTGACATTGGCCATCAGCTCGATGCTTTCCAGCAGGTTGCGGGCGATCACCGGCAGCATCACGTTCAGCTCGAAGTTACCGGCTTGACCTGCGACGGCGATGGTCGCGTCGTTGCCAATCACTTGGGCGGCGACCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1090282‑1090127 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgaccatCGCCGTCGCAGGTCAAGCCGGTAACTTCGAGCTGAACGTGATGCTGCCGGTGATCGCCCGCAACCTGCTGGAAAGCATCGAGCTGATGGCCAATGTCAGCCGCTTGCTGGCCGACAAAGCCATCGCCAGCTTCAAGGTCAACGAAGA  >  NC_002947/1090165‑1090311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.