| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1113976 = | 55 (1.040) | 3 (0.060) | 3/244 | NT | 5.8% | coding (831/954 nt) | rlmF | ribosomal RNA large subunit methyltransferase F |
| ? | NC_002947 | 1114010 = | 44 (0.870) | coding (797/954 nt) | rlmF | ribosomal RNA large subunit methyltransferase F | |||||
AATGAACTGTGGTGCGAGGGTGGCGAAATCCGCTTTGTCACCCAGCTGATCGGCGAAAGCGTGCAGTACGCCGAACGGGTACTTTGGTTCACCAGCCTGGTGTCCAAGGCCAGCAACCTGCCGGGCATCGAAGCCGCGTTGAAGAAGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1114128‑1113976‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAA > NC_002947/1114010‑1114143 AATGAACTGTGGTGCGAGGGTGGCGAAATCCGCTTTGTCACCCAGCTGATCGGCGAAAGCGTGCAGTACGCCGAACGGGTACTTTGGTTCACCAGCCTGGTGTCCAAGGCCAGCAACCTGCCGGGCATCGAAGCCGCGTTGAAGAAGTC > 7:75610/1‑149 ACTGTGGTGCGAGGGTGGCGAAATCCGCTTTGTCACCCAGCTGATCGGCGAAAGCGTGCAGTACGCCGAACGGGTACTTTGGTTCACCAGCCTGGTGTCCAAGGCCAGCAACCTGCCGGGCATCGAAGCCGCGTTGAAGAAGTCCGGC < 8:75610/148‑1 CTGCCGGGCATCGAAGCCGCGTTGAAGAAGTCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCTGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAG > 8:291587/1‑149 TGCCGGGCATCGAAGCCGCGTTGAAGAAGTCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGA < 1:114087/126‑1 TGCCGGGCATCGAAGCCGCGTTGAAGAAGTCCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGA > 2:114087/1‑126 CCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAA > 5:30219/1‑139 CCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAA < 6:30219/139‑1 AATGAACTGTGGTGCGAGGGTGGCGAAATCCGCTTTGTCACCCAGCTGATCGGCGAAAGCGTGCAGTACGCCGAACGGGTACTTTGGTTCACCAGCCTGGTGTCCAAGGCCAGCAACCTGCCGGGCATCGAAGCCGCGTTGAAGAAGTCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1114128‑1113976‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAA > NC_002947/1114010‑1114143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |