New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1113976 =	55 (1.040)	3 (0.060)	3/244	NT	5.8%	coding (831/954 nt)	rlmF	ribosomal RNA large subunit methyltransferase F
	?	NC_002947	1114010 =	44 (0.870)					coding (797/954 nt)	rlmF	ribosomal RNA large subunit methyltransferase F

GATTTACGCTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAAGTTCAGCACGGGCAG  >  NC_002947/1113863‑1114158                                                                                                                                                     |                                                                                                                                                     ctgtggtgcgagggtggcgaaatccgctttgtcacccagctgatcggcgaaagcgtgcagtacgcagaacgggtactttggttcaccagcctggtgtccaaggccagcaacctGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAg                                                                                                                                                     >  8:291587‑M1/114‑149 (MQ=255)       cGCTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGc                                                                                                                                                <  8:142782/148‑1 (MQ=255)        gCTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTg                                                                                                                                              <  6:268838/149‑1 (MQ=255)         cTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCt                                                                                                                                               >  8:9965/1‑147 (MQ=255)         cTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCt                                                                                                                                               <  7:9965/147‑1 (MQ=255)          tGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGc                                                                                                                                            >  8:106949/1‑149 (MQ=255)            ggCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATTATGCGTACGGCCTTGTCGCCGGACTTCTTCAACTCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCt                                                                                                                                          <  6:287724/149‑1 (MQ=255)              cGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTg                                                                                                                                        <  6:363740/149‑1 (MQ=255)                tGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGa                                                                                                                                      <  6:207292/149‑1 (MQ=255)                 gCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGa                                                                                                                                      >  8:252622/1‑148 (MQ=255)                       tccgctttgtcacccagctgatcggcgaaagcgtgcagtacgccgaacgggtactttggttcaccagcctggtgtccaaggccagcaacctGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCa                                                                                                                                                      >  2:114087‑M1/92‑126 (MQ=255)                       tccgctttgtcacccagctgatcggcgaaagcgtgcagtacgccgaacgggtactttggttcaccagcctggtgtccaaggccagcaacctGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCa                                                                                                                                                      <  1:114087‑M1/35‑1 (MQ=255)                          ggCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCt                                                                                                                             <  1:268471/148‑1 (MQ=255)                            cGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGt                                                                                                                          <  7:106949/149‑1 (MQ=255)                                 ggcgTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAAc                                                                                                                      >  7:105060/1‑148 (MQ=255)                                    gtcgtcAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCaaa                                                                                                                  <  8:105060/149‑1 (MQ=255)                                    gtcgtcAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCaaa                                                                                                                  <  1:9597/149‑1 (MQ=255)                                          aaGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTAccc                                                                                                            <  4:150971/149‑1 (MQ=255)                                            ggAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCa                                                                                                                    <  8:271905/139‑1 (MQ=255)                                            ggAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCa                                                                                                                    >  7:271905/1‑139 (MQ=255)                                             gAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTCGCGCCGGACTTCTTCAACACTGCTACGATGAA‑CGGAAGGTTGCTGGACTAAGACAAAAGCCTGAAGAACCAAAGAACCCga                                                                                                          >  2:110794/1‑147 (MQ=255)                                                gCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTg                                                                                                                                        <  4:91143/115‑1 (MQ=255)                                                    cAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGTTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGt                                                                                                   >  8:230945/1‑148 (MQ=255)                                                    cAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCg                                                                                                    <  6:182439/147‑1 (MQ=255)                                                      ggCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACt                                                                                                <  8:85405/149‑1 (MQ=255)                                                                cGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTc                                                                                      >  3:255090/1‑149 (MQ=255)                                                                  gCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGc                                                                                    <  6:17665/149‑1 (MQ=255)                                                                     ctGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGa                                                                                 <  7:252622/149‑1 (MQ=255)                                                                       gTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGAt                                                                                >  6:105743/1‑148 (MQ=255)                                                                        tttCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGAt                                                                                <  4:75817/147‑1 (MQ=255)                                                                         ttCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCCGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAg                                                                             >  4:227566/1‑149 (MQ=255)                                                                              ccccTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTg                                                                          <  4:255090/147‑1 (MQ=255)                                                                                 cTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCt                                                                                         <  5:320314/129‑1 (MQ=255)                                                                                 cTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCt                                                                                         >  6:320314/1‑129 (MQ=255)                                                                                          ctcAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACa                                                                   <  7:287947/142‑1 (MQ=255)                                                                                          ctcAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACa                                                                   >  8:287947/1‑142 (MQ=255)                                                                                               tgatgCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACACGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCg                                                       <  4:9515/149‑1 (MQ=255)                                                                                                       aCGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTc                                               >  5:262507/1‑149 (MQ=255)                                                                                                        cGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCg                                              <  6:262507/149‑1 (MQ=255)                                                                                                           ccTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCCGCGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGca                                            >  1:62979/1‑149 (MQ=255)                                                                                                           ccTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGTTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGcac                                           <  7:230945/149‑1 (MQ=255)                                                                                                                gcgcCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACcaca                                       <  1:138812/148‑1 (MQ=255)                                                                                                                 ctgccgggcatcgaagccgcgttgaagaagtccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCTGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAg                                      >  8:291587‑M2/37‑149 (MQ=255)                                                                                                                  tgccgggcatcgaagccgcgttgaagaagtccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGa                                                            >  2:114087‑M2/36‑126 (MQ=255)                                                                                                                  tgccgggcatcgaagccgcgttgaagaagtccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGa                                                            <  1:114087‑M2/91‑1 (MQ=255)                                                                                                                  GCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGt                                     <  8:75610‑M1/148‑1 (MQ=255)                                                                                                                      GACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCAtt                                >  7:75610‑M1/1‑149 (MQ=255)                                                                                                                           cttcAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCt                           >  5:121634/1‑149 (MQ=255)                                                                                                                            ttcAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCg                                                                                     >  2:102213/1‑90 (MQ=255)                                                                                                                            ttcAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCg                                                                                     <  1:98192/90‑1 (MQ=255)                                                                                                                            ttcAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCg                                                                                     <  1:102213/90‑1 (MQ=255)                                                                                                                            ttcAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCg                                                                                     >  2:98192/1‑90 (MQ=255)                                                                                                                                          gATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTg                          <  7:262257/135‑1 (MQ=255)                                                                                                                                          gATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTg                          >  8:262257/1‑135 (MQ=255)                                                                                                                                          gATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAAGtt              >  6:157985/1‑147 (MQ=255)                                                                                                                                                ccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGaa                 <  6:30219‑M2/134‑1 (MQ=255)                                                                                                                                                ccggcAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGaa                 >  5:30219‑M2/6‑139 (MQ=255)                                                                                                                                                     aGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAAGTTCAGCACGGGCAg  <  2:62979/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GATTTACGCTGGGCGTGCCAGGCTTGGCGTGCGGCGTCGTCAAGGAAGCTCCAGGCGACCATGCGGCTCTGTTTCTGCCCCTGGCCCATCTCAATGATGCGTACGGCCTTGGCGCCGGACTTCTTCAACGCGGCTTCGATGCC‑CGGCAGGTTGCTGGCCTTGGACACCAGGCTGGTGAACCAAAGTACCCGTTCGGCGTACTGCACGCTTTCGCCGATCAGCTGGGTGACAAAGCGGATTTCGCCACCCTCGCACCACAGTTCATTGTTCTGGCCACCGAAGTTCAGCACGGGCAG  >  NC_002947/1113863‑1114158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.