| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1202732 | 59 (1.120) | 4 (0.080) | 4/238 | NT | 6.3% | coding (561/1089 nt) | xcpY | type II secretion pathway protein XcpY |
| ? | NC_002947 | = 1202787 | 63 (1.270) | coding (616/1089 nt) | xcpY | type II secretion pathway protein XcpY | |||||
CTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCGTGCCGCAGCCACCGTGGGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1202577‑1202732‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcagtgTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCAGCACTGCCCACGGTGGCTGCGGCACGCCACCCAAGGCATCAGGCCACGCCAGCCAGTGCTCCTGTCCATCTTCGGCCAAGCCTTTGTAGAGC < NC_002947/1202787‑1202642 CTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCGTGCCGCAGCCACCGTG < 2:334360/149‑1CTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCGTGCCGCAGCCACCGTG < 4:248081/149‑1 CAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCGTGTCGCAGCCACCGTGGGC < 6:94981/149‑1 TGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCGTGCCGCAGCCACCGTGGGCAGTGTGTCGAGCGGCGCAAATACGGTTGGCCAA > 7:116510/1‑149 GCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCGTGCCGCAGCCACCGTGGGCAGTGTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCT > 4:256758/1‑149 CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCGTGCCGCAGCCACCGTGGGCAGTGTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCAGCACTGCCCA < 8:116510/149‑1 AGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCGTGCCGCAGCCACCGTGGGCAGTGTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCAGCACTGCCCACGG < 3:256758/149‑1 GCAGTGTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCAGCACTGCCCACGGTGGCTGCGGCACGCCACCCAAGGCATCAGGCCACGCCAGCCAGTGCTCCTGTCCATCTTCGGCCAAGCCTTTG > 2:334650/1‑146 GCAGTGTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCAGCACTGCCCACGGTGGCTGCGGCACGCCACCCAA > 7:136773/1‑94 GCAGTGTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCAGCACTGCCCACGGTGGCTGCGGCACGCCACCCAA < 8:136773/94‑1 CAGTGTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCAGCACTGCCCACGGTGGCTGCGGCACGCCACCCAAGGCATCAGGCCACGCCAGCCAGTGCTCCTGTCCATCTTCGGCCAAGCCTTTGTAGA < 1:213356/149‑1 GTGTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCGGCACTGCCCACGGTGGCTGCGGCACGC < 1:194932/84‑1 GTGTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCAGCACTGCCCACGGTGGCTGCGGCACGCCACCCAAGGCATCAGGCCACGCCAGCCAGTGCTCCTGTCCATCTTCGGCCAAGCCTTTGTAGAGC < 6:114497/149‑1 CTGCAGCTGCTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTACAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGTGGCGTGCCGCAGCCACCGTGGGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1202577‑1202732‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcagtgTGTCGAGCGGCGCAAATACGGTTGGCCAATTGCCGCTCAGCGACGTCCTGTGCAGCACTGCCCACGGTGGCTGCGGCACGCCACCCAAGGCATCAGGCCACGCCAGCCAGTGCTCCTGTCCATCTTCGGCCAAGCCTTTGTAGAGC < NC_002947/1202787‑1202642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |