New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1202732	59 (1.120)	4 (0.080)	4/238	NT	6.3%	coding (561/1089 nt)	xcpY	type II secretion pathway protein XcpY
	?	NC_002947	= 1202787	63 (1.270)					coding (616/1089 nt)	xcpY	type II secretion pathway protein XcpY

CTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCCGCCAGCAGCAGCGGCTGCTGGCAGCTTGCCTGGT  >  NC_002947/1202586‑1202878                                                                                                                                                     |                                                                                                                                                   ctgcCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGtgct                                                                                                                                                  >  1:334650/1‑149 (MQ=255)   gcCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGtgctgc                                                                                                                                                <  8:265556/149‑1 (MQ=255)    ccATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGtgctgc                                                                                                                                                <  8:270476/148‑1 (MQ=255)    ccATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGca                                                                                                                                               >  1:208326/1‑149 (MQ=255)      aTCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTAGCAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGtgctgcc                                                                                                                                               >  1:270256/1‑147 (MQ=255)         aCCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGGCTGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAg                                                                                                                                            <  1:233325/148‑1 (MQ=255)           ccGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACg                                                                                                                                        >  1:42396/1‑149 (MQ=255)                ccAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCt                                                                                                                                   <  2:322803/149‑1 (MQ=255)                    gATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGc                                                                                                                               <  2:208326/149‑1 (MQ=255)                      tGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCgg                                                                                                                             <  2:270256/149‑1 (MQ=255)                         gcCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCaa                                                                                                                          >  8:159761/1‑149 (MQ=255)                            tggcaatggcaaCGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGtgtcgagcggcgcaaatacggttggccaa                                                                                                                       >  7:116510‑M1/1‑120 (MQ=255)                            tggcaatggcaaCGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTg                                                                                                                       >  1:264061/1‑149 (MQ=255)                              gcaatggcaaCGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTgg                                                                                                                      <  2:264061/148‑1 (MQ=255)                                 atggcaaCGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCaa                                                                                                                  <  7:159761/149‑1 (MQ=255)                                    gcaaCGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGtgtcgagcggcgcaaatacggttggccaattgccgct                                                                                                               >  4:256758‑M1/1‑112 (MQ=255)                                         gCACCCCCGGCATGTCGCTCTA‑TAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTAttt                                                                                                          <  5:135748/149‑1 (MQ=255)                                             ccccGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTgcgc                                                                                                      <  2:42396/149‑1 (MQ=255)                                              cccGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGcgcc                                                                                                     >  4:42222/1‑149 (MQ=255)                                               ccGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCg                                                                                                                                     >  4:91086/1‑116 (MQ=255)                                               ccGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCg                                                                                                                                     <  3:91086/116‑1 (MQ=255)                                                  gCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTc                                                                                                 >  1:308092/1‑149 (MQ=255)                                                         gCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACAcac                                                                                          <  6:114497‑M2/149‑4 (MQ=255)                                                           tctA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACAcactg                                                                                        <  1:213356‑M2/149‑6 (MQ=255)                                                                cAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGtgtcgagcggcgcaaatacggttggccaattgccgctcagcgacgtcctgtgcagcactgccca                                                                                    <  8:116510‑M1/149‑65 (MQ=255)                                                                cAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACAcactgc                                                                                       >  2:334650‑M2/1‑140 (MQ=255)                                                                cAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCg                                                                                    >  6:356797/1‑149 (MQ=255)                                                                cAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCg                                                                                    <  5:114497/149‑1 (MQ=255)                                                                cAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCg                                                                                    >  8:94247/1‑149 (MQ=255)                                                                  aaGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGc                                                                                  <  3:42222/149‑1 (MQ=255)                                                                  aaGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGc                                                                                  <  2:308092/149‑1 (MQ=255)                                                                   aGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGtgtcgagcggcgcaaatacggttggccaattgccgctcagcgacgtcctgtgcagcactgcccacgg                                                                                 <  3:256758‑M1/149‑68 (MQ=255)                                                                         ggCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGGCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTc                                                                            <  6:188899/148‑1 (MQ=255)                                                                            cgtaGATGGACAGGAGCACTGGGTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGAcc                                                                        <  7:290676/146‑1 (MQ=255)                                                                             gAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTCGCGCCGCTCGACACACTGCCCGGCCTGTTCGACcg                                                                       >  2:77907/1‑149 (MQ=255)                                                                               aGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACcgcg                                                                     >  4:117865/1‑149 (MQ=255)                                                                                gATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCgcgc                                                                    <  3:124892/149‑1 (MQ=255)                                                                                         gAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGTAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGt                                                           <  8:202504/149‑1 (MQ=255)                                                                                         gAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGt                                                                              >  1:226656/1‑130 (MQ=255)                                                                                         gAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGt                                                                              <  2:226656/130‑1 (MQ=255)                                                                                         gAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGt                                                           >  4:159929/1‑149 (MQ=255)                                                                                           gCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGa                                                                                               >  7:127422/1‑111 (MQ=255)                                                                                           gCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGa                                                                                               <  8:127422/111‑1 (MQ=255)                                                                                               tggctggcGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTc                                                     >  1:245432/1‑149 (MQ=255)                                                                                                 gctggcGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTc                                                     <  2:213356/147‑1 (MQ=255)                                                                                                 gctggcGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGt                                                   >  6:296806/1‑149 (MQ=255)                                                                                                 gctggcGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGt                                                   <  3:159929/149‑1 (MQ=255)                                                                                                 gctggcGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGt                                                   >  1:24630/1‑149 (MQ=255)                                                                                                     gcGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAg                                                             >  3:93079/1‑135 (MQ=255)                                                                                                     gcGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAg                                                             <  4:93079/135‑1 (MQ=255)                                                                                                           ccTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGtt                                                  >  4:224266/1‑140 (MQ=255)                                                                                                           ccTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGtt                                                  <  3:224266/140‑1 (MQ=255)                                                                                                             tGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTgc                                                         >  1:132917/1‑131 (MQ=255)                                                                                                             tGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTgc                                                         <  2:132917/131‑1 (MQ=255)                                                                                                             tGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCt                                       >  5:8631/1‑149 (MQ=255)                                                                                                             tGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCt                                       >  7:80044/1‑149 (MQ=255)                                                                                                             tGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCt                                       >  3:262664/1‑149 (MQ=255)                                                                                                               aTGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCt                                       <  2:24630/147‑1 (MQ=255)                                                                                                               aTGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTcc                                     >  2:258454/1‑149 (MQ=255)                                                                                                                  ccTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCCg                                   <  2:245432/148‑1 (MQ=255)                                                                                                                    ttGGG‑TGGCGTGCCGCAGCCAGCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGt                                                           <  2:120137/122‑1 (MQ=255)                                                                                                                    ttGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACAcactgc                                                                                       <  8:136773‑M2/94‑7 (MQ=255)                                                                                                                    ttGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACAcactgc                                                                                       >  7:136773‑M2/1‑88 (MQ=255)                                                                                                                      ggg‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCCGCcag                               <  8:80044/148‑1 (MQ=255)                                                                                                                      ggg‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTCGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCCGCcag                               <  1:77907/148‑1 (MQ=255)                                                                                                                            gCGTGCCGCAGCCACCGTGGGCAGTGCCGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACAcac                                                                                          <  1:194932‑M2/84‑4 (MQ=255)                                                                                                                             cGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCCGCCagcagcagc                        >  1:339748/1‑149 (MQ=255)                                                                                                                                 ccGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCTGCCAGCAGCCGCTgc                     <  3:249859/148‑1 (MQ=255)                                                                                                                                 ccGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCTGCCAGCAGCCGCTgc                     >  4:249859/1‑148 (MQ=255)                                                                                                                                    cAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCCGCCAGCAGCAGCGgctgct                 <  2:339748/149‑1 (MQ=255)                                                                                                                                      gCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCCGCCAGCAGCAGCGGCTGCTgg               <  1:258454/149‑1 (MQ=255)                                                                                                                                         aCCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAg                                                             >  6:61305/1‑100 (MQ=255)                                                                                                                                         aCCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAg                                                             <  5:61305/100‑1 (MQ=255)                                                                                                                                          ccGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACAcactgcccacggtggctgcggcacgccacccaaggcatcaggccacgccagccagtgctcctgtccatcttcggccaagcct           <  3:256758‑M2/149‑83 (MQ=255)                                                                                                                                             tGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACAcactgcccacggtggctgcggcacgccacccaaggcatcaggccacgccagccagtgctcctgtccatcttcggccaagcctttg        <  8:116510‑M2/149‑86 (MQ=255)                                                                                                                                               ggCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCCGCCAGCAGCAGCGGCTGCTGGCAGCTTGc       <  5:296806/148‑1 (MQ=255)                                                                                                                                                gCAGTGtgtcgagcggcgcaaatacggttggccaattgccgctcagcgacgtcctgtgcagcactgcccacggtggctgcggcacgccacccaaggcatcaggccacgccagccagtgctcctgtccatcttcggccaagcctttg        >  2:334650‑M1/1‑6 (MQ=255)                                                                                                                                                gCAGTGtgtcgagcggcgcaaatacggttggccaattgccgctcagcgacgtcctgtgcagcactgcccacggtggctgcggcacgccacccaa                                                            <  8:136773‑M1/94‑89 (MQ=255)                                                                                                                                                gCAGTGtgtcgagcggcgcaaatacggttggccaattgccgctcagcgacgtcctgtgcagcactgcccacggtggctgcggcacgccacccaa                                                            >  7:136773‑M1/1‑6 (MQ=255)                                                                                                                                                 cAGTGtgtcgagcggcgcaaatacggttggccaattgccgctcagcgacgtcctgtgcagcactgcccacggtggctgcggcacgccacccaaggcatcaggccacgccagccagtgctcctgtccatcttcggccaagcctttgtaga    <  1:213356‑M1/149‑145 (MQ=255)                                                                                                                                                   gtgtgtcgagcggcgcaaatacggttggccaattgccgctcagcgacgtcctgtgcggcactgcccacggtggctgcggcacgc                                                                   <  1:194932‑M1/84‑82 (MQ=255)                                                                                                                                                   gtgtgtcgagcggcgcaaatacggttggccaattgccgctcagcgacgtcctgtgcagcactgcccacggtggctgcggcacgccacccaaggcatcaggccacgccagccagtgctcctgtccatcttcggccaagcctttgtagagc  <  6:114497‑M1/149‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CTGCCATCACCCGAGCCAGGATGCGCCTGGCAATGGCAACGCACCCCCGGCATGTCGCTCTA‑CAAAGGCTTGGCCGAAGATGGACAGGAGCACTGGCTGGCGTGGCCTGATGCCTTGGG‑TGGCGTGCCGCAGCCACCGTGGGCAGTGCTGCACAGGACGTCGCTGAGCGGCAATTGGCCAACCGTATTTGCGCCGCTCGACACACTGCCCGGCCTGTTCGACCGCGCCCGCAAGGTGCGCTCGTTGCCGGCCGCCTCCCGCCAGCAGCAGCGGCTGCTGGCAGCTTGCCTGGT  >  NC_002947/1202586‑1202878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.