New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1273313 = | 53 (1.000) | 3 (0.060) +GCAGGCGACGCGGT |
3/226 | NT | 6.4% | intergenic (+104/+64) | PP_1113/PP_1114 | pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein |
? | NC_002947 | 3028128 = | 45 (0.850) | intergenic (+2/‑220) | PP_2642/pcaY | GntR family transcriptional regulator/aromatic acid chemoreceptor |
GCAACGCCCTGAAGGACGTTGGCCGTAACGACCCGTGCCCGTGCGGTAGCGAGAAGAAGTACAAGAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGA‑GATGGCTCGAACACTGTGGGAGCGGGCGCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1273459‑1273313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCC > NC_002947/3028128‑3028171 |||||||||||||| GCAACGCCCTGAAGGACGTTGGCCGTAACGACCCGTGCCCGTGCGGTAGCGAGAAGAAGTACAAGAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGA‑GATGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAG > 5:10202/1‑148 AGAAGTACAAGAAGTGCCCCGGCGCCTGATCGACTGACGCGATAAAAATCTGAGA‑GATGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTC < 6:10202/149‑1 GAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCC < 3:183366/142‑1 GAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGAGGCTGGCACGGAAACTGTGGGAGCGGGCAAGCCCGCGAAGCAGGCGACGCGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTCCC > 4:183366/1‑142 |||||||||||||| GCAACGCCCTGAAGGACGTTGGCCGTAACGACCCGTGCCCGTGCGGTAGCGAGAAGAAGTACAAGAAGTGCCACGGCGCCTGATCGACTGACGCGATAAAAATCTGAGA‑GATGGCTCGAACACTGTGGGAGCGGGCGCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1273459‑1273313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCC > NC_002947/3028128‑3028171 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |