New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1273313 =	53 (1.000)	3 (0.060) +GCAGGCGACGCGGT	3/226	NT	6.4%	intergenic (+104/+64)	PP_1113/PP_1114	pyridoxal‑phosphate dependent enzyme family protein/SEC‑C domain‑containing protein
	?	NC_002947	3028128 =	45 (0.850)					intergenic (+2/‑220)	PP_2642/pcaY	GntR family transcriptional regulator/aromatic acid chemoreceptor

GCAGTGGGCGACAGTTTTCACCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTCGGTTACCGCACATAA  >  NC_002947/3027987‑3028273                                                                                                                                              |                                                                                                                                                  gcAGTGGGCGACAGTTTTCACCGTTTGGCAATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCa                                                                                                                                            >  8:243066/1‑149 (MQ=255)    gTGGGCGACAGTTTTCACCGTTTGCCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACgg                                                                                                                                         <  1:130907/149‑1 (MQ=255)     tGGGCGACAGTTTTCACCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACggg                                                                                                                                        <  1:224559/149‑1 (MQ=255)          gACAGTTTTCACCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCg                                                                                                                                   >  6:52481/1‑149 (MQ=255)                 ttCCCCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGTGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCgtgt                                                                                                                            >  7:223089/1‑149 (MQ=255)                 ttCACCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCgtgt                                                                                                                            >  7:223088/1‑149 (MQ=255)                    aCCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTcg                                                                                                                         >  8:244671/1‑149 (MQ=255)                                   agaagtacaagaagtgccccggcgcctgatcgactgacgcgataaaaatctgagagatggcacggaaactgtgggagcgggcaagcccgcgaagcaggcgacgcggtGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTc                                                                                                          <  6:10202‑M2/42‑1 (MQ=255)                                      gaACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCca                                                                                                       <  5:19841/149‑1 (MQ=255)                                            gaagtgccacggcgcctgatcgactgacgcgataaaaatctgagaggctggcacggaaactgtgggagcgggcaagcccgcgaagcaggcgacgcggtGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTccc                                                                                                        <  3:183366‑M2/44‑1 (MQ=255)                                            gaagtgccacggcgcctgatcgactgacgcgataaaaatctgagaggctggcacggaaactgtgggagcgggcaagcccgcgaagcaggcgacgcggtGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCGCGCCCGCTccc                                                                                                        >  4:183366‑M2/99‑142 (MQ=255)                                                        gTTTGCTTCGCTGGATGCCGATGATCTCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCt                                                                                     <  8:223089/149‑1 (MQ=255)                                                        gTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCca                                                                                                       <  8:21555/131‑1 (MQ=255)                                                        gTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCca                                                                                                       >  7:21555/1‑131 (MQ=255)                                                        gTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCt                                                                                     <  8:223088/149‑1 (MQ=255)                                                              ttCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCgg                                                                                                                      <  8:190463/110‑1 (MQ=255)                                                              ttCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGAt                                                                               >  3:346334/1‑149 (MQ=255)                                                                 gCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTa                                                                            <  4:346334/149‑1 (MQ=255)                                                                     gATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGc                                                                         <  4:246234/148‑1 (MQ=255)                                                                         ccGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCaaaa                                                                     <  7:244671/148‑1 (MQ=255)                                                                           gATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTa                                                                            <  5:159303/139‑1 (MQ=255)                                                                           gATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTa                                                                            >  6:159303/1‑139 (MQ=255)                                                                           gATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAggg                                                                  <  4:307455/149‑1 (MQ=255)                                                                           gATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAggg                                                                  >  3:307455/1‑149 (MQ=255)                                                                             tGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGtt                                                                <  5:52481/149‑1 (MQ=255)                                                                                gaTCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTccc                                                                                                        <  6:118068/106‑1 (MQ=255)                                                                                gaTCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTccc                                                                                                        >  5:118068/1‑106 (MQ=255)                                                                                 aTCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTAt                                                                           >  8:246077/1‑134 (MQ=255)                                                                                 aTCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTAt                                                                           <  7:246077/134‑1 (MQ=255)                                                                                 aTCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGc                                                            >  1:6682/1‑149 (MQ=255)                                                                                      gCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTaa                                                       <  7:243066/149‑1 (MQ=255)                                                                                          gCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAggg                                                   >  3:128465/1‑149 (MQ=255)                                                                                               ccAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTc                                               >  8:237696/1‑148 (MQ=255)                                                                                                    gCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGcc                                         >  5:108148/1‑149 (MQ=255)                                                                                                      cTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCctc                                       >  6:305357/1‑149 (MQ=255)                                                                                                         gCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCctct                                      <  2:6682/147‑1 (MQ=255)                                                                                                         gCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTgg                                    >  6:332537/1‑149 (MQ=255)                                                                                                         gCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTgg                                    >  7:169484/1‑149 (MQ=255)                                                                                                         gCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTg                                     <  1:114011/148‑1 (MQ=255)                                                                                                           aGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGt                                  <  4:128465/149‑1 (MQ=255)                                                                                                               gCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGtctc                               >  1:84930/1‑148 (MQ=255)                                                                                                                 aGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAAc                            <  8:36438/149‑1 (MQ=255)                                                                                                                      aaGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATg                                                                          >  7:35138/1‑98 (MQ=255)                                                                                                                           aTTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGt                   >  4:5994/1‑148 (MQ=255)                                                                                                                             tGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTc                 <  3:5994/148‑1 (MQ=255)                                                                                                                              ggCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTCg                <  7:237696/148‑1 (MQ=255)                                                                                                                               gCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTCgg               <  5:305357/148‑1 (MQ=255)                                                                                                                               gCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTCGGt              >  4:152430/1‑149 (MQ=255)                                                                                                                                            gCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTgg                                    <  8:15741/114‑1 (MQ=255)                                                                                                                                            gCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTgg                                    >  7:15741/1‑114 (MQ=255)                                                                                                                                            gCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTCGGTTACCGCACATaa  <  3:152430/148‑1 (MQ=255)                                                                                                                                              ggATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAg                                                     <  7:68482/95‑1 (MQ=255)                                                                                                                                              ggATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAg                                                     >  8:68482/1‑95 (MQ=255)                                                                                                                                              |                                                                                                                                                  GCAGTGGGCGACAGTTTTCACCGTTTGGCCATGCCGAGAACGCCTTGCGCCTAGGGTTTGCTTCGCTGGATGCCGATGAGATCCGGCAGGCGACCCAACGCCTGGCAGACGCAGCTAAAGCGATTGGCAAGGCGCGGTAGCGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGTGATCGCGCTGGCCTCAGGATTTATGCAAAAGGGTTATGCCCTAAAGGGTTTCGAGGCCTCTGGGTCTCAACGCATTCCGTTCGGTTACCGCACATAA  >  NC_002947/3027987‑3028273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.