| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1543781 | 34 (0.640) | 4 (0.080) | 4/242 | NT | 11.5% | coding (585/1245 nt) | mdfA | multidrug MFS transporter |
| ? | NC_002947 | = 1543810 | 29 (0.580) | coding (614/1245 nt) | mdfA | multidrug MFS transporter | |||||
CAACATCGCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1543628‑1543781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAGCACCGCGCCGATGGCGAATGCCACGAACAGCCAGCGCCAGTCCAGCCATTGCAGCAGCAAGGTGCCCAC < NC_002947/1543810‑1543665 CAACATCGCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGG < 2:4041/149‑1 ATCGCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGT < 8:26942/149‑1 TTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGG < 5:164654/140‑1 TTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGG > 6:164654/1‑140 CTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGC < 3:323537/129‑1 CTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGAATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGC > 4:323537/1‑129 CTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTC > 6:169427/1‑149 TGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACG < 4:328227/149‑1 CACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCA < 6:108021/149‑1 CTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGG < 5:169427/149‑1 GTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAGCACCGCGCCGATGGCGAATGCCACGAACAGCCAGCGCCAGTCCAGCCATTGCAGCAGCAAGGTGCCCAC > 8:147563/1‑149 CAACATCGCCTTGCTGTCGCCCCTGCTCGGGCCGCTGGTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1543628‑1543781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtgAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAGCACCGCGCCGATGGCGAATGCCACGAACAGCCAGCGCCAGTCCAGCCATTGCAGCAGCAAGGTGCCCAC < NC_002947/1543810‑1543665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |