New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1543781	34 (0.640)	4 (0.080)	4/242	NT	11.5%	coding (585/1245 nt)	mdfA	multidrug MFS transporter
	?	NC_002947	= 1543810	29 (0.580)					coding (614/1245 nt)	mdfA	multidrug MFS transporter

GTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGTCGCCGGTGCT  >  NC_002947/1543665‑1543945                                                                                                                                                  |                                                                                                                                        gtggGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcac                                                                                                                                      >  8:147563‑M2/1‑146 (MQ=255)      cACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGa                                                                                                                                 <  4:73791/149‑1 (MQ=255)      cACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGACGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGa                                                                                                                                 >  8:59168/1‑149 (MQ=255)      cACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGACGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGa                                                                                                                                 <  7:59168/149‑1 (MQ=255)                                    ctggctgTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTAGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATg                                                                                                   <  7:233773/149‑1 (MQ=255)                                              gTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCa                                                                                               >  6:272647/1‑143 (MQ=255)                                              gTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCa                                                                                               <  5:272647/143‑1 (MQ=255)                                                 gCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTgg                                                                                       <  1:175935/148‑1 (MQ=255)                                                  cATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGc                                                                                     <  8:186621/149‑1 (MQ=255)                                                    ttCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCaa                                                                                   >  2:177879/1‑149 (MQ=255)                                                        ccATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTg                                                                                                                <  1:149274/116‑1 (MQ=255)                                                        ccATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTg                                                                                                                >  2:149274/1‑116 (MQ=255)                                                          aTCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCgg                                                                                                         >  6:316336/1‑121 (MQ=255)                                                          aTCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCgg                                                                                                         <  5:316336/121‑1 (MQ=255)                                                              gcgcGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACcgccgc                                                                            >  3:319595/1‑146 (MQ=255)                                                              gcgcGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACcgccgc                                                                            <  4:319595/146‑1 (MQ=255)                                                              gcgcGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTc                                                                         >  3:335161/1‑149 (MQ=255)                                                              gcgcGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTc                                                                         <  7:193158/149‑1 (MQ=255)                                                                    tGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTgca                                                                   <  4:335161/149‑1 (MQ=255)                                                                        gACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTgcagg                                                                 >  3:184697/1‑147 (MQ=255)                                                                                tgctgctgTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCgccgcc                                                       >  5:211525/1‑149 (MQ=255)                                                                                     ctgTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGcgccgc                                                        <  6:214292/143‑1 (MQ=255)                                                                                     ctgTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGcgccgc                                                        >  5:214292/1‑143 (MQ=255)                                                                                       gTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGt                                                >  8:258572/1‑149 (MQ=255)                                                                                        tACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGt                                                <  4:109703/148‑1 (MQ=255)                                                                                                    ccGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgccagtccagccattgcag                                   <  5:169427‑M2/149‑103 (MQ=255)                                                                                                          aCCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGAt                             <  4:184697/149‑1 (MQ=255)                                                                                                              tGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgccagtccagccattgcagcagcaaggtg                         <  6:108021‑M2/149‑113 (MQ=255)                                                                                                              tGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTgg                                                  >  5:105276/1‑124 (MQ=255)                                                                                                              tGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTgg                                                  <  6:105276/124‑1 (MQ=255)                                                                                                                  cGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTcacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgccagtccagccattgcagcagcaaggtgccca                     <  4:328227‑M2/149‑117 (MQ=255)                                                                                                                      gAGCGCCGTGACGGCTCGCGGCTGGCGTTcacgcccagggtttccggcatcaaccggtacagcagcagccaggtcagcaccgcgccgatggcgaatgccacgaacagccagcgccagtccagccattgcagcagcaaggtgcccaccag                 >  6:169427‑M2/1‑29 (MQ=255)                                                                                                                           ccGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCt                        >  4:185032/1‑137 (MQ=255)                                                                                                                                   gCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGc                                    >  2:193991/1‑117 (MQ=255)                                                                                                                                   gCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGc                                    <  1:193991/117‑1 (MQ=255)                                                                                                                                     tCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGTCGCCGGtgct  >  5:262859/1‑149 (MQ=255)                                                                                                                                     tCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGTCGCCGGtgct  >  1:291009/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                        GTGGGCACCTTGCTGCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCACTGTTGGCGGGCTATGGCCAGTTGCTGGGCAACCGCCGCTTCGTTGCAGGCAGCGCCGCCCTTGGGTTGGTCGGATTGCCGCTGATTGGCTGGATTGGCCTGTCGCCGGTGCT  >  NC_002947/1543665‑1543945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.