| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1762690 | 42 (0.800) | 7 (0.140) | 6/242 | NT | 14.0% | coding (324/477 nt) | PP_1569 | hypothetical protein |
| ? | NC_002947 | = 1762715 | 46 (0.910) | coding (349/477 nt) | PP_1569 | hypothetical protein | |||||
CTGCCTTGCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1762539‑1762690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatgCCGCTTGGATCGCAGGATTAAGCACCATGCCATAGGCGACGGCGTCAGCCTTGTCATAGGCATCGGCCAGAGCCTGCCGTGCATGGTCGAGCAGGCGGCAGCGCAGAGTTTGGTCCTGCTCTGCCTCAGCAGCAGCAATCGCCGCG < NC_002947/1762715‑1762570 CTGCCTTGCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATG < 7:175185/147‑1 GCCTTGCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCAT > 2:92986/1‑149 CCTTGCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATG < 8:284412/149‑1 CCTTGCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATG > 5:277843/1‑149 GCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCATGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATG < 1:256621/140‑1 GCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATG < 1:114551/140‑1 GCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATG > 2:114551/1‑140 GCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATG > 2:256621/1‑140 GCGAATACAGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAACCTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATG > 1:138691/1‑124 ATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATGCCGCTTGGATCGCAGGATTAAGCACCATGCCATAG < 5:206493/149‑1 AGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATGCCGCTTGGATCGCAGGATTAAGCACCATGCCAT < 3:16877/130‑1 AGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAACGCTGACGCCGTCTCCTATGGCATGCCGCTTGGATCGCAGGATTAAGCACCATGCCAT > 4:16877/1‑130 GCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATGCCGCTTGGATCGCAGGATTAAGCACC > 5:264037/1‑120 GCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATGCCGCTTGGATCGCAGGATTAAGCACC < 6:264037/120‑1 TCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATGCCGCTTGGATCGCAGGATTAAGCACCATGCCATAG < 7:25631/117‑1 TCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATGCCGCTTGGATCGCAGGATTAAGCACCATGCCATAG > 8:25631/1‑117 CTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATG < 2:63763/61‑1 CTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATG > 1:63763/1‑61 GCATGCCGCTTGGATCGCAGGATTAAGCACCATGCCATAGGCGACGGCGTCAGCCTTGTCATAGGCATCGGCCAGAGCCTGCCGTGCATGGTCGAGCAGGCGGCAGCGCAGAGTTTGGTCCTGCTCTGCCTCAGCAGCAGCAATCGCCG > 6:359800/1‑149 GCATGCCGCTTGGATCGCAGGATTAAGCACCATGCCATAGGCGACGGCGTCAGCCTTGTCATAGGCATCGGCCAGAGCCTGCCGTGCATGGTCGAGCAGGCGGCAGCGCAGAGTTTGGTCCTGCTCTGCCTCAGCAGCA < 3:78502/139‑1 GCATGCCGCTTGGATCGCAGGATTAAGCACCATGCCATAGGCGACGGCGTCAGCCTTGTCATAGGCATCGGCCAGAGCCTGCCGTGCATGGTCGAGCAGGCGGCAGCGCAGAGTTTGGTCCTGCTCTGCCTCAGCAGCA > 4:78502/1‑139 ATGCCGCTTGGATCGCAGGATTAAGCACCATGCCATAGGCGACGGCGTCAGCCTTGTCATAGGCATCGGCCAGAGCCTGCCGTGCATGGTCGAGCAGGCGGCAGCGCAGAGTTTGGTCCTGCTCTGCCTCAGCAGCAGCAATCGCCGCG < 5:359800/149‑1 CTGCCTTGCAGCTAGCCAAGGAGGCGAATACCGCGGCGATTGCTGCTGCTGAGGCAGAGCAGGACCAAACTCTGCGCTGCCGCCTGCTCGACCATGCACGGCAGGCTCTGGCCGATGCCTATGACAAGGCTGACGCCGTCGCCTATGGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1762539‑1762690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcatgCCGCTTGGATCGCAGGATTAAGCACCATGCCATAGGCGACGGCGTCAGCCTTGTCATAGGCATCGGCCAGAGCCTGCCGTGCATGGTCGAGCAGGCGGCAGCGCAGAGTTTGGTCCTGCTCTGCCTCAGCAGCAGCAATCGCCGCG < NC_002947/1762715‑1762570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |