New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1843419	52 (0.980)	4 (0.080)	4/242	NT	6.6%	coding (1375/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 1843446	64 (1.270)					coding (1348/2754 nt)	gacS	sensor protein GacS

CTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1843271‑1843419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCGGTGTCGACAGTACC  <  NC_002947/1843446‑1843300                                                                                                                                                                                                                                                                                                          CTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTG                                                                                                                                                     <  2:89788/149‑1         GAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCT                                                                                                                                                      <  8:134541/140‑1         GAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGCTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCT                                                                                                                                                      >  7:134541/1‑140                                   TGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCT                                                                                                                   >  6:351212/1‑149                                       GACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCA                                                                                                                <  5:351212/148‑1                                          ACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAG                                                                                                                       <  3:272015/138‑1                                          ACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAG                                                                                                                       >  4:272015/1‑138                                                                                                                                                GGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCGGTGTCGACA       <  2:10459/148‑1                                                                                                                                                GGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCGGTGTCGACA       <  3:45225/148‑1                                                                                                                                                GGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCAC                                                                        >  7:72217/1‑83                                                                                                                                                GGCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCAC                                                                        <  8:72217/83‑1                                                                                                                                                 GCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGAT                  >  7:94836/1‑136                                                                                                                                                 GCCTGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGAT                  <  8:94836/136‑1                                                                                                                                                    TGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCG                <  3:342897/135‑1                                                                                                                                                    TGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCG                >  4:342897/1‑135                                                                                                                                                    TGTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCCGCACAGGTCAGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCGGTGTCGACAGTACC  >  3:85241/1‑149                                                                                                                                                                                                                                                                                                          CTGATCCAGAACTGCGAACCTTCGCCCGGGGTACTGTCGACACCGATCTCGCCGCCCATCTGTTCGATCAGGCGCTTGGAAATCACCAGCCCCAGACCGGTGCCGCCGGGCTGGCGGGCCAGTGAGTTGTCAGCCTGGCTGAAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1843271‑1843419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgTCACCTCAGGATGTGCGCACACTGTTCCAGGCCTTCAGCCAGGCTGACAACTCACTGGCCCGCCAGCCCGGCGGCACCGGTCTGGGGCTGGTGATTTCCAAGCGCCTGATCGAACAGATGGGCGGCGAGATCGGTGTCGACAGTACC  <  NC_002947/1843446‑1843300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.