New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1846324	62 (1.170)	4 (0.080)	4/244	NT	5.9%	coding (615/1377 nt)	pfeS‑II	histidine kinase
	?	NC_002947	= 1846357	67 (1.320)					coding (648/1377 nt)	pfeS‑II	histidine kinase

ACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAACCAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTGTCGGCCCGCCTGGACTCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1846184‑1846324 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcCAGTTCGCCCAATTCGTCATGCCGGGCGATGGTGCGCGAGTCCAGGCGGGCCGACAGCTGATCGGCCCGCCAGGCATTGGCCTGCTCGCGAAGTTGGTTCAGCGGCACGATCAGCATGCGGTACAGGCCTACACACAACAGCAAGGT  <  NC_002947/1846357‑1846211                                                                                                                                                                                                                                                                                                  ACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAACCAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTGTCGGCCCGCCTGGACTCGCGCCAGTTCGC                                                                                                                                             >  5:51656/1‑149                                 GCTGTGGTGTGTTGGCTTGTACCGCCGGTGTATCGTGCCGCTGAACCAACTTCGCGAGCTGGCCATTGCCTGGGGGGCCGATCTGGTGTCGGCCCGCCTGGACTCGCGCCAGTTCGCCCAATTCGTCATGCCGGGCGATGGTGCGCGA                                                                                                              <  6:51656/148‑1                                               GCCTGTACCGCATGCTGATCGTGCCGCTGACCCAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTGTCGGCCCGCCTGGACTCGCGCCAGTTCGCCCAATTCGTCATGCCGGGCGATGGTGCGCGAGTCCAG                                                                                                        <  7:294792/140‑1                                               GCCTGTACCGCATGCTGATCGTGCCGCTGAACCAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTGTCGGCCCGCCTGGACTCGCGCCAGTTCGCCCAATTCGTCATGCCGGGCGATGGTGCGCGAGTCCAG                                                                                                        >  8:294792/1‑140                                                                                                                                         CGCGCCAGTTCGCCCAATTCGTCATGCCGGGCGATGGTGCGCGAGTCCAGGCGGGCCGACAGCTGATCGGCCCGCCAGGCATTGGCCTGCTCGCGAAGTTGGTTCAGCGGCACGATCAGCATGCGGTACAGGCCTACACACAACAGC       >  6:245581/1‑147                                                                                                                                            GCCAGTTCGCCCAATTCGTCATGCCGGGCGATGGTGCGCGAGTCCAGGCGGGCCGACAGCTGATCGGCCCGCCAGGCATTGGCCTGCTCGCGAAGTTGGTTCAGCGGCACGATCAGCATGCGGTACAGGCCTACACACAACAGCAAGGT  <  5:335054/149‑1                                                                                                                                                                                                                                                                                                  ACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAACCAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTGTCGGCCCGCCTGGACTCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1846184‑1846324 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcCAGTTCGCCCAATTCGTCATGCCGGGCGATGGTGCGCGAGTCCAGGCGGGCCGACAGCTGATCGGCCCGCCAGGCATTGGCCTGCTCGCGAAGTTGGTTCAGCGGCACGATCAGCATGCGGTACAGGCCTACACACAACAGCAAGGT  <  NC_002947/1846357‑1846211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.