New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1936355	46 (0.870)	5 (0.100)	4/246	NT	11.4%	coding (657/1149 nt)	PP_1736	hypothetical protein
	?	NC_002947	= 1936390	33 (0.650)					coding (692/1149 nt)	PP_1736	hypothetical protein

CGTTGACCATCGACCACCTGCTGGCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1936237‑1936355 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgACCACCAGCACCCGGCTGGCGCCCAGGTGCAAGGCCGGG  <  NC_002947/1936390‑1936352                                                                                                                                                                CGTTGACCATCGACCACCTGCTGGCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTTGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCATTCGGCGCCTATCAGCCCGGC‑‑CTTGCACCCGGCTGGCGCCCAGGTGCAA         <  5:122964/149‑1        CATCGACCACCTGCTGGCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGACCACCAGCACCCGGCTGGCGCCCAGGTGCAAGGCCG    >  6:247981/1‑149          TCGACCACCTGCTGGCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGACCACCAGCACCCGGCTGGCGCCCAGGTGCAAGGCCGGG  <  5:247981/149‑1                          CAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGACCACCAGCACCCGGCTGGCGCCCAGGTGCAAGGCCGGG  >  3:220608/1‑133                          CAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGACCACCAGCACCCGGCTGGCGCCCAGGTGCAAGGCCGGG  <  4:220608/133‑1                                                                                                                                                                CGTTGACCATCGACCACCTGCTGGCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1936237‑1936355 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgACCACCAGCACCCGGCTGGCGCCCAGGTGCAAGGCCGGG  <  NC_002947/1936390‑1936352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.