New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1936355	46 (0.870)	5 (0.100)	4/246	NT	11.4%	coding (657/1149 nt)	PP_1736	hypothetical protein
	?	NC_002947	= 1936390	33 (0.650)					coding (692/1149 nt)	PP_1736	hypothetical protein

GACCACCTGCTGGCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTACGTTCATTGACAGCCTGGAAGGCGATAT  >  NC_002947/1936248‑1936528                                                                                                                                               |                                                                                                                                           gACCACCTGCTGGCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGt                                                                                                                                      <  5:18525/149‑1 (MQ=255)             gCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGt                                                                                                                                      <  4:222466/137‑1 (MQ=255)             gCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGt                                                                                                                                      >  3:222466/1‑137 (MQ=255)               cAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCg                                                                                                                         >  2:98999/1‑148 (MQ=255)                        gATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAg                                                                                                               >  2:211978/1‑149 (MQ=255)                                   tgtgCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTGGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTa                                                                                                    <  4:92716/149‑1 (MQ=255)                                     ttCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTAcc                                                                                                  >  5:199146/1‑149 (MQ=255)                                     ttCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTAcc                                                                                                  >  3:137237/1‑149 (MQ=255)                                         ccccGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGccc                                                                                              <  3:200376/149‑1 (MQ=255)                                         ccccGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGccc                                                                                              <  4:313643/149‑1 (MQ=255)                                                    cTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCACCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGtt                                                                                   <  6:348925/149‑1 (MQ=255)                                                         cggcgAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCg                                                                              <  6:199146/149‑1 (MQ=255)                                                                    aCGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGcc                                                                    >  3:227523/1‑148 (MQ=255)                                                                     cGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGa                                                                  <  1:94176/149‑1 (MQ=255)                                                                     cGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGa                                                                  <  1:211978/149‑1 (MQ=255)                                                                     cGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGCCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGa                                                                  <  5:123922/149‑1 (MQ=255)                                                                      ggCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGt                                                                                                                                      <  5:343208/80‑1 (MQ=255)                                                                      ggCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGt                                                                                                                                      >  6:343208/1‑80 (MQ=255)                                                                      ggCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGc                                                                                                                  <  5:233949/100‑1 (MQ=255)                                                                      ggCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGc                                                                                                                  >  6:233949/1‑100 (MQ=255)                                                                      ggCGACGGAGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAg                                                                 >  8:5411/1‑149 (MQ=255)                                                                                      gcCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTg                                                             >  4:271820/1‑137 (MQ=255)                                                                                      gcCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTg                                                             <  3:271820/137‑1 (MQ=255)                                                                                        cAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATcggcgg                                               <  7:5411/149‑1 (MQ=255)                                                                                             ggCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAg                                                       <  1:158233/136‑1 (MQ=255)                                                                                             ggCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAg                                                       >  2:158233/1‑136 (MQ=255)                                                                                                   gATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTc                                     >  2:40620/1‑148 (MQ=255)                                                                                                       aGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACa                                 <  4:227523/148‑1 (MQ=255)                                                                                                         cccGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTcgggctgatcggcgccgactggcgcactgcaccgtcgccgtaatactcgccgcccagttgcaccggggcgaacagcagcgggatcgccgcactggccagcaggtggtcga                              <  5:247981‑M2/149‑111 (MQ=255)                                                                                                         cccGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTcgggctgatcggcgccgactggcgcactgcaccgtcgccgtaatactcgccgcccagttgcaccggggcgaacagcagcgggatcgccgcactg                                              <  4:220608‑M2/133‑95 (MQ=255)                                                                                                         cccGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTcgggctgatcggcgccgactggcgcactgcaccgtcgccgtaatactcgccgcccagttgcaccggggcgaacagcagcgggatcgccgcactg                                              >  3:220608‑M2/1‑39 (MQ=255)                                                                                                         cccGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCTAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTa                              >  4:52907/1‑149 (MQ=255)                                                                                                         cccGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCACAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTa                              <  4:226800/149‑1 (MQ=255)                                                                                                         cccGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCACAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTa                              >  3:226800/1‑149 (MQ=255)                                                                                                           cGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTcgggctgatcggcgccgactggcgcactgcaccgtcgccgtaatactcgccgcccagttgcaccggggcgaacagcagcgggatcgccgcactggccagcaggtggtcgatg                            >  6:247981‑M2/1‑37 (MQ=255)                                                                                                             gCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTACGtt                          >  1:110055/1‑149 (MQ=255)                                                                                                                ttGCACCTGGGCGCCAGCCGGGTGCAAG‑‑GCcgggctgataggcgccgaatggcgcactgcaccgtcgccgtaatactcgccgccaagttgcaccggggcgaacagcagcgggatcgccgcactggccagcaggtggtcgatggtcaacg                     <  5:122964‑M2/149‑120 (MQ=255)                                                                                                                 tGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTACGTTCAtt                      >  2:21533/1‑149 (MQ=255)                                                                                                                  gCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTACGTTCAtt                      <  1:21533/148‑1 (MQ=255)                                                                                                                     ccTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTACGTTCATTGACa                  <  3:319074/149‑1 (MQ=255)                                                                                                                           cgcCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTACGTTCATTGACAGCCTgg            <  1:98999/149‑1 (MQ=255)                                                                                                                              cAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTACGTTCATTGACAGCCTGGAAg         <  1:40620/149‑1 (MQ=255)                                                                                                                                     gTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTACGTTCATTGACAGCCTGGAAGGCGatat  <  5:122553/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                           GACCACCTGCTGGCCAGTGCGGCGATCCCGCTGCTGTTCGCCCCGGTGCAACTGGGCGGCGAGTATTACGGCGACGGTGCAGTGCGCCAGTCGGCGCCGATCAGCCCGGCCTTGCACCTGGGCGCCAGCCGGGTGCTGGTGGTCGGGGTCAGCGGAAACCCGCAGCGGCCAGCGCCACCTGTACCGCCCCAGCGTGTGTTCAGCGGGCAGCAGCCGAGCCTGGCGCAGATCGGCGGGCACATGCTCAACAGTACGTTCATTGACAGCCTGGAAGGCGATAT  >  NC_002947/1936248‑1936528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.