New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2098415 =	53 (1.000)	3 (0.060)	3/226	NT	5.5%	coding (1475/2358 nt)	PP_1875	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	2098464 =	55 (1.170)					coding (1426/2358 nt)	PP_1875	two‑component system sensor histidine kinase/response regulator

CGGCCGCGTCGACGTGCGCTTGGCGGCCATTGTCGGTGGTGTGCGTCTGGAGGTACGGGATACCGGCATCGGCATCCCCGAAGACGCCCAGGCGCGCATCTTCCAGCCCTTCACCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2098576‑2098415 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccggcctgggTGAAGGGCTGGAAGATGCGCGCCTGGGCGTCTTCGGGGATGCCGATGCCGGTATCCCGTACCTCCAGACGCACACCACCGACAATGGCCGCCAAGCGCACGTCGACGCGGCCGAAGCGGGTGAACTTCAGCGCGTTGGACAGCAGGT  >  NC_002947/2098464‑2098610                                                                                                                                                                                                                                                                                                                       CGGCCGCGTCGACGTGCGCTTGGCGGCCATTGTCGGTGGTGTGCGTCTGGAGGTACGGGATACCGGCATCGGCATCCCCGAAGACGCCCAGGCGCGCATCTTCCAGCCCTTCACCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTG                                                                                                                                                                  >  7:327659/1‑149         TCGACGTGCGCTTGGCGGCCATTGTCGGTGGTGTGCGTCTGGAGGTACGGGATACCGGCATCGGCATCCCCGAAGACGCCCAGGCGCGCATCTTCCAGCCCTTCACCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGC                                                                                                                                                          >  4:35428/1‑149                        CGGCCATTGTCGGTGGTGTGCGTCTGGAGGTACGGGATACCGGCATCGGCATCCCCGAAGACGCCCAGGCGCGCATCTTCCAGCCCTTCACCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCG                                                                                                                                                            >  1:60736/1‑132                        CGGCCATTGTCGGTGGTGTGCGTCTGGAGGTACGGGATACCGGCATCGGCATCCCCGAAGACGCCCAGGCGCGCATCTTCCAGCCCTTCACCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCG                                                                                                                                                            <  2:60736/132‑1                                 TCGGTGGTGTGCGTCTGGAGGTACGGGATACCGGCATCGGCATCCCCGAAGACGCTCAGGCGCGCATCTTCCAGCCCTTCACCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTG                                                                                                                                                                  >  1:312131/1‑117                                 TCGGTGGTGTGCGTCTGGAGGTACGGGATACCGGCATCGGCATCCCCGAAGACGCTCAGGCGCGCATCTTCCAGCCCTTCACCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTG                                                                                                                                                                  <  2:312131/117‑1                                                                                                                   CCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGTGAAGGGCTGGAAGATGCGCGCCTGGGCGTCTTCGGGGATGCCGATGCCGGTATCCCGTACCTCCAGACGCACACCACCGACAATGGCCGCCAAGCGCACG                                                >  4:243558/1‑149                                                                                                                         CGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGTGAAGGGCTGGAAGATGCGCGCCTGGGCGTCTTCGGGGATGCCGATGCCGGTATC                                                                                              <  3:290395/97‑1                                                                                                                         CGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGTGAAGGGCTGGAAGATGCGCGCCTGGGCGTCTTCGGGGATGCCGATGCAGGTATC                                                                                              >  4:290395/1‑97                                                                                                                                                      GCACCGGCCTGGGTGAAGGGCTGGAAGATGCGCGCCTGGGCGTCTTCGGGGATGCCGATGCCGGTATCCCGTACCTCCAGACGCACACCACCGACAATGGCCGCCAAGCGCACGTCGACGCGGCCGAAGCGGGTGAACTTCAGCGCGTT             <  5:273428/149‑1                                                                                                                                                         CCGGCCTGGGTGAAGGGCTGGAAGATGCGCGCCTGGGCGTCTTCGGGGATGCCGATGCCGGTATCCCGTACCTCCAGACGCACACCACCGACAATGGCCGCCAAGCGCACGTCGACGCGGCCGAAGCGGGTGAACTTCAGCGCGTTGGA          <  7:92492/149‑1                                                                                                                                                             CCTGGGTGAAGGGCTGGAAGATGCGCGCCTGGGCGTCTTCGGGGATGCCGATGCCGGTATCCCGTACCTCCAGACGCACACCACCGACAATGGCCGCCAAGCGCACGTCGACGCGGCCGAAGCGGGTGAACTTCAGCGCGTTGGACAGC      <  4:329128/149‑1                                                                                                                                                                 GGTGAAGGGCTGGAAGATGCGCGCCTGGGCGTCTTCGGGGATGCCGATGCCGGTATCCCGTACCTCCAGACGCACACCACCGACAATGGCCGCCAAGCGCACGTCGACGCGGCCGAAGCGGGTGAACTTCAGCGCGTTGGACAGCAGGT  <  2:60646/149‑1                                                                                                                                                                                                                                                                                                                       CGGCCGCGTCGACGTGCGCTTGGCGGCCATTGTCGGTGGTGTGCGTCTGGAGGTACGGGATACCGGCATCGGCATCCCCGAAGACGCCCAGGCGCGCATCTTCCAGCCCTTCACCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2098576‑2098415 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccggcctgggTGAAGGGCTGGAAGATGCGCGCCTGGGCGTCTTCGGGGATGCCGATGCCGGTATCCCGTACCTCCAGACGCACACCACCGACAATGGCCGCCAAGCGCACGTCGACGCGGCCGAAGCGGGTGAACTTCAGCGCGTTGGACAGCAGGT  >  NC_002947/2098464‑2098610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.