| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2567057 = | 56 (1.060) | 4 (0.080) | 4/244 | NT | 7.5% | coding (871/879 nt) | PP_2250 | LysR family transcriptional regulator |
| ? | NC_002947 | 2567103 = | 45 (0.890) | coding (825/879 nt) | PP_2250 | LysR family transcriptional regulator | |||||
GTCGCGGGTCGCCCCGCTGCTGGCCAGCGGGCGTCTGGTGCGCCTGGAATTCCGTAATACACGCAACGAATTGCAACTGCCCGTGCATATCCTGTGGCGCAAACAACAGCCGCTGCAGCAGGCTGCACGCCTGCTGATCGAGCAGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2567208‑2567057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAAC > NC_002947/2567103‑2567211 GTCGCGGGGCGCCCCGCTGCTGGCCAGCGTGCGTCTGGTGCGCCTGGATTTCCGTAATACACGCAACGAATTGCAACTGCCCGTGCATATCCTGTGGCGCAAACAACAGCCGGTGCAGCAGGCTGCACGCCTGCTGATCGAGCAGCTG < 5:282928/148‑1 TCGCGGGTCGCCCCGCTGCTGGCCAGCGGGCGTCTGGTGCGCCTGGAATTCCGTAATACACGCAACGAATTGCAACTGCCCGTGCATATCCTGTGGCGCAAACAACAGCCGCTGCAGCAGGCTGCACGCCTGCTGATCGAGCAGCTGGC > 3:58518/1‑149 GCGGGTCGCCCCGCTGCTGGCCAGCGGGCGTCTGGTGCGCCTGGAATTCCGTAATACACGCAACGAATTGCAACTGCCCGTGCATATCCTGTGGCGCAAACAACAGCCGCTGCAGCAGGCTGCACGCCTGCTGATCGAGCAGCTGGCT > 7:154445/1‑148 GCAAACAACAGCCGCTGCAGCAGGCTGCACGCCTGCTGATCGAGCAGCTGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGG > 7:265574/1‑149 GCAAACAACAGCCGCTGCAGCAGGCTGCACGCCTGCTGATCGAGCAGCTGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGG < 8:265574/149‑1 CAGCCGCTGCAGCAGGCTGCACGCCTGCTGATCGAGCAGCTGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGC > 3:283177/1‑149 CTGCAGCAGGCTGCACGCCTGCTGATCGAGCAGCTGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAAC < 4:283177/149‑1 GTCGCGGGTCGCCCCGCTGCTGGCCAGCGGGCGTCTGGTGCGCCTGGAATTCCGTAATACACGCAACGAATTGCAACTGCCCGTGCATATCCTGTGGCGCAAACAACAGCCGCTGCAGCAGGCTGCACGCCTGCTGATCGAGCAGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2567208‑2567057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAAC > NC_002947/2567103‑2567211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |