New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2567057 = | 56 (1.060) | 4 (0.080) | 4/244 | NT | 7.5% | coding (871/879 nt) | PP_2250 | LysR family transcriptional regulator |
? | NC_002947 | 2567103 = | 45 (0.890) | coding (825/879 nt) | PP_2250 | LysR family transcriptional regulator |
GGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGCTTCAAC > NC_002947/2566957‑2567243 | ggTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑Ctgttg < 3:179679/149‑1 (MQ=255) tGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTgttgtt < 1:195552/149‑1 (MQ=255) cGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTg < 2:340519/149‑1 (MQ=255) ccccgctgctggccagcgggcgtctggtgcgcctggaattccgtaatacacgcaacgaattgcaactgcccgtgcatatcctgtggcgcaaacaaCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTgc < 8:265574‑M1/54‑1 (MQ=255) ccccgctgctggccagcgggcgtctggtgcgcctggaattccgtaatacacgcaacgaattgcaactgcccgtgcatatcctgtggcgcaaacaaCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTgc > 7:265574‑M1/96‑149 (MQ=255) ccTATCGACCGAGATCTCGGCTTGAGGGGGCAAAGATTGACGGGCTGAGGGCAAATGCTTCCCGACGGGTCGACGGCCGGCAGTCACGGATCAGCCAGCGGCTCGAGCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCca < 5:189407/149‑1 (MQ=255) aTCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCcaca < 7:131967/148‑1 (MQ=255) aTCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCca > 8:131967/1‑146 (MQ=255) gACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGat < 2:110432/149‑1 (MQ=255) tCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑Ctgttg > 6:353018/1‑124 (MQ=255) tCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑Ctgttg < 5:353018/124‑1 (MQ=255) gggTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCCCGGGCAGTTGCAAtg > 8:225934/1‑148 (MQ=255) tAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGc > 7:264488/1‑130 (MQ=255) aaaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGtt < 8:70798/148‑1 (MQ=255) aaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGa < 8:280448/122‑1 (MQ=255) aaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGa > 7:280448/1‑122 (MQ=255) aGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTAtt < 3:228067/148‑1 (MQ=255) aGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTa > 3:159233/1‑149 (MQ=255) tGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACg < 5:270078/149‑1 (MQ=255) cTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGa < 4:159233/149‑1 (MQ=255) ggAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTc > 5:5666/1‑148 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCATGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGtt > 1:69134/1‑119 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCATGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGtt < 2:69134/119‑1 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGCATTCCa < 4:287814/149‑1 (MQ=255) gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTc > 7:268623/1‑147 (MQ=255) aaTTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGgc > 4:58518/1‑149 (MQ=255) aCGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGc > 4:195295/1‑149 (MQ=255) gacggacgGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTgg > 1:177057/1‑149 (MQ=255) gacggacgGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTgg > 8:240410/1‑149 (MQ=255) cggCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTgctggc > 2:199938/1‑142 (MQ=255) cAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCg < 6:5666/149‑1 (MQ=255) aGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgg < 7:240410/149‑1 (MQ=255) gcaaacaacagccgctgcagcaggctgcacgcctgctgatcgagcagctggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg < 8:265574‑M2/95‑1 (MQ=255) gcaaacaacagccgctgcagcaggctgcacgcctgctgatcgagcagctggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg > 7:265574‑M2/55‑149 (MQ=255) aCGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGGCCTGTTGTTTGCGCCACAGGATATGCACGGGCAGATGCAATTAGATGCGTGTATTACGGAATTCCAGGCGCACCAGACCACCGCTGGCCAGCAGCggg > 1:257270/1‑147 (MQ=255) aCGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGc > 5:346159/1‑148 (MQ=255) aCGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCg > 8:154445/1‑149 (MQ=255) ggATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGAc < 6:346159/149‑1 (MQ=255) AGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCcgc > 7:154445‑M1/1‑148 (MQ=255) cagccgctgcagcaggctgcacgcctgctgatcgagcagctggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCcgc > 3:283177‑M2/47‑149 (MQ=255) GCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGa > 3:58518‑M1/1‑149 (MQ=255) CAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCACCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAAATCCAGGCGCACCAGACGCACGCTGGCCAGCAGCGGGGCGCCCCGCGAc < 5:282928‑M1/148‑1 (MQ=255) ctgctCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg < 7:184765/134‑1 (MQ=255) ctgctCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg > 8:184765/1‑134 (MQ=255) ctgcagcaggctgcacgcctgctgatcgagcagctggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAAc < 4:283177‑M2/109‑1 (MQ=255) gctCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACgg > 4:300065/1‑148 (MQ=255) gATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCggg > 5:152502/1‑127 (MQ=255) gATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCggg < 6:152502/127‑1 (MQ=255) tgcagcagGC‑TGCACGCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGAtc > 2:35873/3‑149 (MQ=255) aTCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGAtc > 1:69130/1‑149 (MQ=255) cagcagGC‑TGCACGCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGc > 6:289115/1‑110 (MQ=255) agGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTccc > 8:298592/1‑147 (MQ=255) agGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCa < 3:195295/149‑1 (MQ=255) gCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATTTGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCcagca > 3:52446/1‑109 (MQ=255) gCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATTTGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCcagca < 4:52446/109‑1 (MQ=255) a‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGc > 6:300997/1‑149 (MQ=255) gctgcAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGCt > 7:106582/1‑149 (MQ=255) ctgcAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGc < 3:300065/147‑1 (MQ=255) aGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGCTTCAAc < 7:298592/149‑1 (MQ=255) | GGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGCAGCGG‑CTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGCTTCAAC > NC_002947/2566957‑2567243 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |