New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2567057 =56 (1.060)4 (0.080) 4/244 NT 7.5% coding (871/879 nt) PP_2250 LysR family transcriptional regulator
?NC_002947 2567103 = 45 (0.890)coding (825/879 nt) PP_2250 LysR family transcriptional regulator

GGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGCTTCAAC  >  NC_002947/2566957‑2567243
                                                                                                                                                    |                                                                                                                                            
ggTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCtgttg                                                                                                                                            <  3:179679/149‑1 (MQ=255)
  tGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTgttgtt                                                                                                                                          <  1:195552/149‑1 (MQ=255)
    cGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTg                                                                                                                                        <  2:340519/149‑1 (MQ=255)
     ccccgctgctggccagcgggcgtctggtgcgcctggaattccgtaatacacgcaacgaattgcaactgcccgtgcatatcctgtggcgcaaacaaCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTgc                                                                                                                                       <  8:265574‑M1/54‑1 (MQ=255)
     ccccgctgctggccagcgggcgtctggtgcgcctggaattccgtaatacacgcaacgaattgcaactgcccgtgcatatcctgtggcgcaaacaaCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTgc                                                                                                                                       >  7:265574‑M1/96‑149 (MQ=255)
         ccTATCGACCGAGATCTCGGCTTGAGGGGGCAAAGATTGACGGGCTGAGGGCAAATGCTTCCCGACGGGTCGACGGCCGGCAGTCACGGATCAGCCAGCGGCTCGAGCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCca                                                                                                                                   <  5:189407/149‑1 (MQ=255)
            aTCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCcaca                                                                                                                                 <  7:131967/148‑1 (MQ=255)
            aTCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCca                                                                                                                                   >  8:131967/1‑146 (MQ=255)
               gACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGat                                                                                                                             <  2:110432/149‑1 (MQ=255)
                         tCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCtgttg                                                                                                                                            >  6:353018/1‑124 (MQ=255)
                         tCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCtgttg                                                                                                                                            <  5:353018/124‑1 (MQ=255)
                                   gggTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCCCGGGCAGTTGCAAtg                                                                                                         >  8:225934/1‑148 (MQ=255)
                                      tAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGc                                                                                                                         >  7:264488/1‑130 (MQ=255)
                                        aaaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGtt                                                                                                     <  8:70798/148‑1 (MQ=255)
                                         aaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGa                                                                                                                              <  8:280448/122‑1 (MQ=255)
                                         aaGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGa                                                                                                                              >  7:280448/1‑122 (MQ=255)
                                                 aGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTAtt                                                                                            <  3:228067/148‑1 (MQ=255)
                                                 aGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTa                                                                                           >  3:159233/1‑149 (MQ=255)
                                                   tGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACg                                                                                         <  5:270078/149‑1 (MQ=255)
                                                     cTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGa                                                                                       <  4:159233/149‑1 (MQ=255)
                                                          ggAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTc                                                                                   >  5:5666/1‑148 (MQ=255)
                                                           gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCATGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGtt                                                                                                               >  1:69134/1‑119 (MQ=255)
                                                           gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCATGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGtt                                                                                                               <  2:69134/119‑1 (MQ=255)
                                                           gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGCATTCCa                                                                                 <  4:287814/149‑1 (MQ=255)
                                                           gAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTc                                                                                   >  7:268623/1‑147 (MQ=255)
                                                              aaTTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGgc                                                                              >  4:58518/1‑149 (MQ=255)
                                                                         aCGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGc                                                                   >  4:195295/1‑149 (MQ=255)
                                                                                gacggacgGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTgg                                                            >  1:177057/1‑149 (MQ=255)
                                                                                gacggacgGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTgg                                                            >  8:240410/1‑149 (MQ=255)
                                                                                      cggCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTgctggc                                                        >  2:199938/1‑142 (MQ=255)
                                                                                         cAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCg                                                   <  6:5666/149‑1 (MQ=255)
                                                                                          aGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgg                                                  <  7:240410/149‑1 (MQ=255)
                                                                                              gcaaacaacagccgctgcagcaggctgcacgcctgctgatcgagcagctggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg                                                <  8:265574‑M2/95‑1 (MQ=255)
                                                                                              gcaaacaacagccgctgcagcaggctgcacgcctgctgatcgagcagctggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg                                                >  7:265574‑M2/55‑149 (MQ=255)
                                                                                              aCGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCCTGTTGTTTGCGCCACAGGATATGCACGGGCAGATGCAATTAGATGCGTGTATTACGGAATTCCAGGCGCACCAGACCACCGCTGGCCAGCAGCggg                                                 >  1:257270/1‑147 (MQ=255)
                                                                                              aCGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGc                                               >  5:346159/1‑148 (MQ=255)
                                                                                              aCGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCg                                              >  8:154445/1‑149 (MQ=255)
                                                                                                ggATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGAc                                            <  6:346159/149‑1 (MQ=255)
                                                                                                     AGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCcgc                                        >  7:154445‑M1/1‑148 (MQ=255)
                                                                                                      cagccgctgcagcaggctgcacgcctgctgatcgagcagctggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCcgc                                        >  3:283177‑M2/47‑149 (MQ=255)
                                                                                                      GCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGa                                      >  3:58518‑M1/1‑149 (MQ=255)
                                                                                                        CAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCACCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAAATCCAGGCGCACCAGACGCACGCTGGCCAGCAGCGGGGCGCCCCGCGAc                                     <  5:282928‑M1/148‑1 (MQ=255)
                                                                                                           ctgctCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg                                                <  7:184765/134‑1 (MQ=255)
                                                                                                           ctgctCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCgggg                                                >  8:184765/1‑134 (MQ=255)
                                                                                                            ctgcagcaggctgcacgcctgctgatcgagcagctggctgTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAAc                                  <  4:283177‑M2/109‑1 (MQ=255)
                                                                                                             gctCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACgg                                >  4:300065/1‑148 (MQ=255)
                                                                                                                 gATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCggg                                                 >  5:152502/1‑127 (MQ=255)
                                                                                                                 gATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCggg                                                 <  6:152502/127‑1 (MQ=255)
                                                                                                                  tgcagcagGCTGCACGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGAtc                          >  2:35873/3‑149 (MQ=255)
                                                                                                                  aTCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGAtc                          >  1:69130/1‑149 (MQ=255)
                                                                                                                    cagcagGCTGCACGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGc                                                               >  6:289115/1‑110 (MQ=255)
                                                                                                                        agGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTccc                      >  8:298592/1‑147 (MQ=255)
                                                                                                                        agGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCa                    <  3:195295/149‑1 (MQ=255)
                                                                                                                              gCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATTTGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCcagca                                                      >  3:52446/1‑109 (MQ=255)
                                                                                                                              gCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATTTGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCcagca                                                      <  4:52446/109‑1 (MQ=255)
                                                                                                                                aGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGc            >  6:300997/1‑149 (MQ=255)
                                                                                                                                      gctgcAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGCt       >  7:106582/1‑149 (MQ=255)
                                                                                                                                       ctgcAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGc        <  3:300065/147‑1 (MQ=255)
                                                                                                                                           aGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGCTTCAAc  <  7:298592/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                            
GGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCAGCCTGCTGCAGCGGCTGTTGTTTGCGCCACAGGATATGCACGGGCAGTTGCAATTCGTTGCGTGTATTACGGAATTCCAGGCGCACCAGACGCCCGCTGGCCAGCAGCGGGGCGACCCGCGACAACGGCAGATCTCCCCAGCCCAAGCCAGCTTCAAC  >  NC_002947/2566957‑2567243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.