| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2591383 = | 53 (1.000) | 5 (0.100) | 4/244 | NT | 9.1% | coding (299/450 nt) | PP_2269 | N‑acetylmuramoyl‑L‑alanine amidase |
| ? | NC_002947 | 2591422 = | 49 (0.970) | coding (338/450 nt) | PP_2269 | N‑acetylmuramoyl‑L‑alanine amidase | |||||
TTATAAGTTGGCCGCTACCCACGGTTTAACGTCGAAGCTCGGGCAAGCCTTGGCTACTTTCGGGAAGTCCCGGTGGCCTTGGATTGTCGCGCTGGGGTATTTCTCTTTCAGCTCGCCCAGCAGGTGCTTGAGACTTGCAAACTGCTCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2591534‑2591383‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATGGCAGCCG > NC_002947/2591422‑2591567 TTATAAGTTGGCCGCTACCCACGGTTTAACGTCGAAGCTCGGGCAAGCCTTGGCTACTTTCGGGAAGTCCCGGTGGCCTTGGATTGTCGCGCTGGGGTATTTCTCTTTCAGCTCGCCCAGCAGGTGCTTGAGACTTGCAAACTGCTCGG > 1:173548/1‑149 GCTACTTTCGGGAAGTCCCGGTGGCCTTGGATTGTCGCGCTGGGGTATTTCTCTTTCAGCTCGCCCAGCAGGTGCTTGAGACTTGCAAACTGCTCGGGC > 1:223251/1‑99 GCTACTTTCGGGAAGTCCCGGTGGCCTTGGATTGTCGCGCTGGGGTATTTCTCTTTCAGCTCGCCCAGCAGGTGCTTGAGACTTGCAAACTGCTCGGGC < 2:223251/99‑1 GCTCGCCCAGCAGGTGCTTGAGACTTGCAAACTGCTCGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAAC > 2:78134/1‑149 GCTCGCCCAGCAGGTGCTTGAGACTTGCAAACTGCTCGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAAC > 5:349499/1‑149 CCCAGCAGGTGCTTGAGACTTGCAAACTGCTCGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGG > 1:17175/1‑132 CCCAGCAGGTGCTTGAGACTTGCAAACTGCTCGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGG < 2:17175/132‑1 AACTGCTCGGGCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGACTCGTGGGCCCTCAGTTGGAT < 6:349499/149‑1 GCGAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATGGCAGCCG > 1:71911/1‑149 TTATAAGTTGGCCGCTACCCACGGTTTAACGTCGAAGCTCGGGCAAGCCTTGGCTACTTTCGGGAAGTCCCGGTGGCCTTGGATTGTCGCGCTGGGGTATTTCTCTTTCAGCTCGCCCAGCAGGTGCTTGAGACTTGCAAACTGCTCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2591534‑2591383‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgAGCTGAAAGAGAAATACCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATGGCAGCCG > NC_002947/2591422‑2591567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |