New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2591383 =	53 (1.000)	5 (0.100)	4/244	NT	9.1%	coding (299/450 nt)	PP_2269	N‑acetylmuramoyl‑L‑alanine amidase
	?	NC_002947	2591422 =	49 (0.970)					coding (338/450 nt)	PP_2269	N‑acetylmuramoyl‑L‑alanine amidase

GATCAAATCGGCGCCCACGTAGAGGGCCATAACAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATGGCAGCCG  >  NC_002947/2591277‑2591567                                                                                                                                                    |                                                                                                                                                   gATCAAATCGGCGCCCACGTAGAGCGCCATAACAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGCGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCt                                                                                                                                                 >  6:1635/1‑149 (MQ=255)  gttggccgctacccacggtttaacgtcgaagctcgggcaagccttggctactttcgggaagtcccggtggccttggattgtcgcgctggggtatttctctttcagctCGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGc                                                                                                                                                  >  2:78134‑M1/108‑149 (MQ=255)  gttggccgctacccacggtttaacgtcgaagctcgggcaagccttggctactttcgggaagtcccggtggccttggattgtcgcgctggggtatttctctttcagctCGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGc                                                                                                                                                  >  5:349499‑M1/108‑149 (MQ=255)      aaTCGGCGCCCACGTAGAGGGCCATAACATCCAACTCCGTAGGCATTTGCATGCCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGAACCTGCTGGGCGAGATGa                                                                                                                                               >  1:31767/1‑147 (MQ=255)        tCGGCGCCCACGTAGAGGGCCATAACAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCCCCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGaaa                                                                                                                                             >  4:314422/1‑146 (MQ=255)        tCGGCGCCCACGTAGAGGGCCATAACAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCGGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAagag                                                                                                                                          <  3:230814/149‑1 (MQ=255)          ggCGCCCACGTAGAGGGCCATAACAT‑CAACTCCGTAGGCATTTTCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCGCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAgaga                                                                                                                                         <  2:31767/148‑1 (MQ=255)                   gTAGAGGGCCATAACAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGaaa                                                                                                                                             >  1:21412/1‑135 (MQ=255)                   gTAGAGGGCCATAACAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGaaa                                                                                                                                             <  2:21412/135‑1 (MQ=255)                             aTAACAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGGAACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAAt                                                                                                                     >  1:87047/1‑149 (MQ=255)                             aTAACAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATc                                                                                                                    >  1:14190/1‑149 (MQ=255)                                aCAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCaa                                                                                                                 <  8:231371/149‑1 (MQ=255)                                           cGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCAc                                                                                                           <  8:285847/145‑1 (MQ=255)                                           cGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCAc                                                                                                           >  7:285847/1‑145 (MQ=255)                                            gTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGa                                                                                                      >  5:258553/1‑149 (MQ=255)                                             tAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGAc                                                                                                     >  7:7551/1‑149 (MQ=255)                                               ggCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACtt                                                                                                   >  6:363528/1‑149 (MQ=255)                                                  aTTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTc                                                                                                  >  6:318116/1‑147 (MQ=255)                                                  aTTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTc                                                                                                  <  5:318116/147‑1 (MQ=255)                                                         tGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAg                                                                                                                <  5:320211/126‑1 (MQ=255)                                                         tGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAg                                                                                                                >  6:320211/1‑126 (MQ=255)                                                         tGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTa                                                                                         <  2:14190/149‑1 (MQ=255)                                                         tGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTa                                                                                         <  2:87047/149‑1 (MQ=255)                                                          ggCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAg                                                                                        >  7:221479/1‑149 (MQ=255)                                                          ggCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAg                                                                                        >  2:78588/1‑149 (MQ=255)                                                             cGGTGGAGTCACCGTGGCGG‑ACATCAACGTCCCCGTAAACAACTTAAAGCCCGATCATTTTGCAAGTCTGAAGCACCTGCTTGGCGAGCTTAAATATAAATATCCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGcc                                                                                      <  1:78588/149‑1 (MQ=255)                                                                tGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAgg                                                                                  <  1:190530/149‑1 (MQ=255)                                                                  gAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGc                                                                                 <  5:363528/148‑1 (MQ=255)                                                                   aGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCtt                                                                               <  6:258553/149‑1 (MQ=255)                                                                     tCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGc                                                                             <  8:7551/149‑1 (MQ=255)                                                                       aCCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGccc                                                                           >  2:208932/1‑149 (MQ=255)                                                                       aCCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCAAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGccc                                                                           >  6:85644/1‑149 (MQ=255)                                                                         cGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGc                                                                                 <  8:102056/141‑1 (MQ=255)                                                                         cGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGc                                                                                 >  7:102056/1‑141 (MQ=255)                                                                         cGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGccc                                                                           >  5:255672/1‑147 (MQ=255)                                                                         cGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGccc                                                                           <  6:255672/147‑1 (MQ=255)                                                                         cGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGccc                                                                           >  1:264242/1‑147 (MQ=255)                                                                           aGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGc                                                                       >  7:293320/1‑149 (MQ=255)                                                                                             cccGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTg                                                      <  1:208932/149‑1 (MQ=255)                                                                                                      aacTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGc                                             >  2:173548/1‑149 (MQ=255)                                                                                                         ttCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCaa                                          >  2:290206/1‑149 (MQ=255)                                                                                                         ttCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTAAAACCGt                                                       >  5:195293/1‑136 (MQ=255)                                                                                                          gctcgcccagcaggtgcttgagacttgcaaactgctcgggcgAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAAc                                         >  2:78134‑M2/43‑149 (MQ=255)                                                                                                          gctcgcccagcaggtgcttgagacttgcaaactgctcgggcgAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAAc                                         >  5:349499‑M2/43‑149 (MQ=255)                                                                                                           cACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACt                                        >  2:133096/1‑149 (MQ=255)                                                                                                              GCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGc                                                                                       >  1:223251‑M1/1‑99 (MQ=255)                                                                                                              GCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGc                                                                                       <  2:223251‑M1/99‑1 (MQ=255)                                                                                                               cccagcaggtgcttgagacttgcaaactgctcgggcgAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTgg                                                     <  2:17175‑M2/95‑1 (MQ=255)                                                                                                               cccagcaggtgcttgagacttgcaaactgctcgggcgAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTgg                                                     >  1:17175‑M2/38‑132 (MQ=255)                                                                                                                CCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATaa                                   >  1:173548‑M1/1‑149 (MQ=255)                                                                                                                  gAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAaga                                 <  5:85644/149‑1 (MQ=255)                                                                                                                          tGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTgg                          <  1:290206/148‑1 (MQ=255)                                                                                                                             aaGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGccc                      >  4:184886/1‑149 (MQ=255)                                                                                                                              tccctcAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCt                     <  1:126043/146‑1 (MQ=255)                                                                                                                                    aaGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTc                                                                                                  <  8:234551/66‑1 (MQ=255)                                                                                                                                    aaGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTc                                                                                                  >  7:234551/1‑66 (MQ=255)                                                                                                                                    aaGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGtt                <  3:184886/148‑1 (MQ=255)                                                                                                                                    aaGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTg               >  7:55951/1‑149 (MQ=255)                                                                                                                                      gCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCTACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGa             <  8:293320/149‑1 (MQ=255)                                                                                                                                       aactgctcgggcgAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGACTCGTGGGCCCTCAGTTGGat            <  6:349499‑M2/136‑1 (MQ=255)                                                                                                                                          ctgctgGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATg         <  1:133096/149‑1 (MQ=255)                                                                                                                                                 gcgAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATGGCAgccg  >  1:71911‑M2/4‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   GATCAAATCGGCGCCCACGTAGAGGGCCATAACAT‑CAACTCCGTAGGCATTTGCATGGCCGGTGGAGTCACCGAGGCGG‑ACATCAACGTCCCCGAAAACAACTTCACGCCCGAGCAGTTTGCAAGTCTCAAGCACCTGCTGGGCGAGCTGAAAGAGAAATA‑CCCCAGCGCGACAATCCAAGGCCACCGGGACTTCCCGAAAGTAGCCAAGGCTTGCCCGAGCTTCGACGTTAAACCGTGGGTAGCGGCCAACTTATAAGAGTCGTGGGCCCTCAGTTGGATATGGCAGCCG  >  NC_002947/2591277‑2591567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.