New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2739580 =	56 (1.060)	4 (0.080)	4/240	NT	7.4%	coding (1959/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein
	?	NC_002947	2739650 =	47 (0.940)					coding (2029/4494 nt)	PP_2395	leucine‑rich repeat‑containing protein

GCCCCGGGAACACCCGGCGCAGCGCCGCGCTGCCGGGGGTGTCGCTGGGCTGCAAGGCTTCGAAAAGGTGCTGCAGCAGTGTTCGGCGCTGCGTCCAGGCCAACGCGGCCAGTGCCTGATCTGTCAGGCCACTCGCACCTGGCAGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2739731‑2739580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgaACACTGCTGCAGCACCTTTTCGAAGCCTTGCAGCCCAGCGACACCCCCGGCAGCGCGGCGCTGCGCCGGGTGTTCCCGGGGCTGAGCGCGCGCACTGCGCAAGCACTGGTACAGGCCGCCAGCAGCGTTGATCGCATGCGGCTGCT  >  NC_002947/2739650‑2739795                                                                                                                                                                                                                                                                                                            GCCCCGGGAACACCCGGCGCAGCGCCGCGCTGCCGGGGGTGTCGCTGGGCTGCAAGGCTTCGAAAAGGTGCTGCAGCAGTGTTCGGCGCTGCGTCCAGGCCAACGCGGCCAGTGCCTGATCTGTCAGGCCACTCGCACCTGGCAGGCGC                                                                                                                                                       <  7:278858/149‑1  CCCCGGGAACACCCGGCGCAGCGCCGCGCTGCCGGGGGTGTCGCTGGGCTGCAAGGCTTCGAAAAGGTGCTGCAGCAGTGTTCGGCGCTGCGTCCAGGCCAACGCGGCCAGTGCCTGATCTGTCAGGCCACTCGCACCTGGCAGGCGCC                                                                                                                                                      >  1:40562/1‑149    CCGGGAACACCCGGCGCAGCGCCGCGCTGCCGGGGGTGTCGCTGGGCTGCAAGGCTTCGAAAAGGTGCTGCAGCAGTGTTCGGCGCTGCGTCCAGGCCAACGCGGCCAGTGCCTGATCTGTCAGGCCACTCGCACCTGGCAGGCGCCGA                                                                                                                                                    <  1:75877/149‑1    CCGGGAACACCCGGCGCAGCGCCGCGCTGCCGGGGGTGTCGCTGGGCTGCAAGGCTTCGAAAAGGTGCTGCAGCAGTGTTCGGCGCTGCGTCCAGGCCAACGCGGCCAGTGCCTGATCTGTCAGGCCACTCGCACCTGGCAGGCGCCGA                                                                                                                                                    <  7:40691/149‑1                                                                               GTGTTCGGCGCTGCGTCCAGGCCAACGCGGCCAGTGCCTGATCTGTCAGGCCACTCGCACCTGGCAGGCGCCGAACACTGCTGCAGCACCTTTTCGAAGCCTTGCAGCCCAGCGACACCCCCGGCAGCGCGGCGCTGCGCCGGGTGTTC                                                                         >  2:78301/1‑149                                                                                TGTTCGGCGCTGCGTCCAGGCCAACGCGGCCAGTGCCTGATCTGTCAGGCCACTCGCACCTGGCAGGCGCCGAACACTGCTGCAGCACCTTTTCGAAGCCTTGCAGCCCAGCGACACCCCCGGCAGCGCGGCGCTGCGCCGGGTGTTCC                                                                        >  3:137462/1‑149                                                                                  TTCGGCGCTGCGTCCAGGCCAACGCGGCCAGTGCCTGATCTGTCAGGCCACTCGCACCTGGCAGGCGCCGAACACTGCTGCAGCACCTTTTCGAAGCCTTGCAGCCCAGCGACACCCCCGGCAGCGCGGCGCTGCGCCGGGTGTTCCCG                                                                      >  3:162294/1‑149                                                                                                                            TCAGGCCACTCGCACCTGGCAGGCGCCGAACACTGCTGCAGCACCTTTTCGAAGCCTTGCAGCCCAGCGACACCCCCGGCAGCGCGGCGCTGCGCCGGGTGTTCCCGGGGCTGAGCGCGCGCACTGCGCAAGCACTGGTACAGG                                 <  4:137462/144‑1                                                                                                                                                   CGCCGAACACTGCTGCAGCACCTTTTCGAAGCCTTGCAGCCCAGCGACACCCCCGGCAGCGCGGCGCTGCGCCGGGTGTTCCCGGGGCTGAGCGCGCGCACTGCGCAAGCACTGGTACAGGCCGCCAGCAGCGTTGATCGCATGCGGCT     <  5:47518/149‑1                                                                                                                                                      CGAACACTGCTGCAGCACCTTTTCGAAGCCTTGCAGCCCAGCGACACCCCCGGCAGCGCGGCGCTGCGCCGGGTGTTCCCGGGGCTGAGCGCGCGCACTGCGCAAGCACTGGTACAGGCCGCCAGCAGCGTTGATCGCATGCGGCTGCT  <  8:63349/149‑1                                                                                                                                                                                                                                                                                                            GCCCCGGGAACACCCGGCGCAGCGCCGCGCTGCCGGGGGTGTCGCTGGGCTGCAAGGCTTCGAAAAGGTGCTGCAGCAGTGTTCGGCGCTGCGTCCAGGCCAACGCGGCCAGTGCCTGATCTGTCAGGCCACTCGCACCTGGCAGGCGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2739731‑2739580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgaACACTGCTGCAGCACCTTTTCGAAGCCTTGCAGCCCAGCGACACCCCCGGCAGCGCGGCGCTGCGCCGGGTGTTCCCGGGGCTGAGCGCGCGCACTGCGCAAGCACTGGTACAGGCCGCCAGCAGCGTTGATCGCATGCGGCTGCT  >  NC_002947/2739650‑2739795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.