New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2772192	49 (0.930)	4 (0.080)	4/242	NT	7.4%	coding (624/906 nt)	PP_2425	AraC family transcriptional regulator
	?	NC_002947	= 2772220	53 (1.050)					coding (596/906 nt)	PP_2425	AraC family transcriptional regulator

TTCGCCAATCAGCATCTGCTGCGCCTTGAGTAGCCGCAAGCGCTTCAGGTACTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2772039‑2772192 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgCCGCCCTCGCCCACCTGCGCGAGCACTACGCCGAGCCGCTGAGCGTGGAGGCACTGGCCGCGCGGGCCAACATGAGCGTTTCGACCTTCCATGAA  <  NC_002947/2772220‑2772126                                                                                                                                                                                                                                                           TTCGCCAATCAGCATCTGCTGCGCCTTGAGTAGCCGCAAGCGCTTCAGGTACTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCT                                                                                                      >  3:48550/1‑149   CGCCTATCAGGATCTGCTGCGCGTTGAGTAGCCGGAAGGGGTTCAGGTACTGCATTGGGGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGTAGGTCGATAGGCTCTTGTTGGGCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTC                                                                                                     <  5:324654/148‑1                     GCGCCTTGAGTAGCCGCAAGTGCTTCAGGTACTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCACGGCc                                                                                                 >  2:312745/1‑133                                   CGCAAGCGCTTCAGGTACTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGCCGCCCTCGCCCACCTGCGCGAGCACTAC                                                                    <  3:243796/149‑1                                        GCGCTTCAGGTACTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGCCGCCCTCGCCCACCTGCGCGAGCACTACGCCGA                                                               <  1:215041/149‑1                                                    CTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGCCGCCCTCGCCCACCTGCGCGAGCACTACGCCGAGC                                                             <  3:97234/139‑1                                                    CTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGCCGCCCTCGCCCACCTGCGCGAGCACTACGCCGAGC                                                             >  4:97234/1‑139                                                                                                                                                        GCGCCGCCCTCGCCCACCTGCGCGAGCACTACGCCGAGCCGCTGAGCGTGGAGGCACTGGCCGCGCGGGCCAACATGAGCGTTTCGACCTTCCATGAA  <  3:150770/98‑1                                                                                                                                                        GCGCCGCCCTCGCCCACCTGCGCGAGCACTACGCCGAGCCGCTGAGCGTGGAGGCACTGGCCGCGCGGGCCAACATGAGCGTTTCGACCTTCCATGAA  >  4:150770/1‑98                                                                                                                                                                                                                                                           TTCGCCAATCAGCATCTGCTGCGCCTTGAGTAGCCGCAAGCGCTTCAGGTACTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2772039‑2772192 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgCCGCCCTCGCCCACCTGCGCGAGCACTACGCCGAGCCGCTGAGCGTGGAGGCACTGGCCGCGCGGGCCAACATGAGCGTTTCGACCTTCCATGAA  <  NC_002947/2772220‑2772126

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.