New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2772192	49 (0.930)	4 (0.080)	4/242	NT	7.4%	coding (624/906 nt)	PP_2425	AraC family transcriptional regulator
	?	NC_002947	= 2772220	53 (1.050)					coding (596/906 nt)	PP_2425	AraC family transcriptional regulator

TACTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCTTGGCGTCAAGCGGGTCCTGCAGGCAGTGC  >  NC_002947/2772088‑2772363                                                                                                                                     |                                                                                                                                                tACTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGTGAGGGCGGCGCCGATGCGGGCGaa                                                                                                                                 <  6:276399/149‑1 (MQ=255)   cTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGt                                                                                                                               <  2:255253/149‑1 (MQ=255)           gcgcCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGt                                                                                                                       >  3:297294/1‑149 (MQ=255)           gcgcCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGt                                                                                                                       <  5:313934/149‑1 (MQ=255)                  gTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTcc                                                                                                                 <  4:297294/148‑1 (MQ=255)                     ggTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTccac                                                                                                               >  6:135183/1‑147 (MQ=255)                       tGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGt                                                                                                           <  8:188459/149‑1 (MQ=255)                         cAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGccc                                                                                                                           <  7:243044/131‑1 (MQ=255)                         cAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGccc                                                                                                                           >  8:243044/1‑131 (MQ=255)                           ccgcTTGAATTGTTCATGGAAGGTAGAAACGCTCATGTTGGCCAGCGCTGCCAGTGCCTCCACGATCAGAGCCTCGCCGTAGTGATCGCGCAGGTGTGCAAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGATGCTCCACCAGTGccc                                                                                                       >  6:53704/2‑149 (MQ=255)                             gcTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGc                                                                                                                                    <  2:194393/118‑1 (MQ=255)                             gcTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGc                                                                                                                                    >  1:194393/1‑118 (MQ=255)                             gcTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCg                                                                                                      >  5:79342/1‑148 (MQ=255)                                  aaGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAaca                                                                                                 >  2:258548/1‑148 (MQ=255)                                   aGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCgg                                                                                                                                      >  2:62906/1‑110 (MQ=255)                                    gtgtTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCt                                                                                                                         >  7:182674/1‑122 (MQ=255)                                    gtgtTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCt                                                                                                                         <  8:182674/122‑1 (MQ=255)                                    gtgtTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGt                                                                                                                       <  7:322566/124‑1 (MQ=255)                                    gtgtTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGt                                                                                                                       >  8:322566/1‑124 (MQ=255)                                       ttCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGcgc                                                                                                                                              <  3:150770‑M2/98‑4 (MQ=255)                                       ttCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGcgc                                                                                                                                              >  4:150770‑M2/1‑95 (MQ=255)                                       ttCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCgg                                                                                           >  1:117834/1‑149 (MQ=255)                                       ttCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCg                                                                                            <  1:258548/148‑1 (MQ=255)                                          aTGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCt                                                                                        <  6:99560/149‑1 (MQ=255)                                           tGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGc                                                                                                     <  2:81110/135‑1 (MQ=255)                                              aaGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCgg                                                                                    <  6:79342/149‑1 (MQ=255)                                                        cGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAgc                                                                          >  2:326711/1‑149 (MQ=255)                                                             aTGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCgg                                                                      >  8:209112/1‑148 (MQ=255)                                                               gTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTccacca                                                                                                             >  8:197692/1‑107 (MQ=255)                                                               gTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTccacca                                                                                                             >  8:203072/1‑107 (MQ=255)                                                               gTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTccacca                                                                                                             <  7:197692/107‑1 (MQ=255)                                                               gTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTccacca                                                                                                             <  7:203072/107‑1 (MQ=255)                                                                ttGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGtata                                                                  <  5:135183/149‑1 (MQ=255)                                                                       gcgcgGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTAGACAGCAcc                                                           >  8:247308/1‑149 (MQ=255)                                                                                     tCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACgcgcgc                                             >  8:51873/1‑149 (MQ=255)                                                                                      ccACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGcc                                            >  5:137671/1‑149 (MQ=255)                                                                                       cACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCTAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGTTATACAGCACCTCGCGTACgcgcgc                                             <  5:53704/147‑1 (MQ=255)                                                                                        aCGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAaca                                                                                                 <  5:2847/94‑1 (MQ=255)                                                                                        aCGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAaca                                                                                                 >  6:2847/1‑94 (MQ=255)                                                                                          gCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGc                                        <  7:51873/149‑1 (MQ=255)                                                                                                  gCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGcgccgagccgctgagcgtggaggcactggccgcgcgggccaacatgagcgtttcgaccttccatgaacacttcaagcgctgcaccgacatggcgccaatgcag                                          >  4:97234‑M2/1‑36 (MQ=255)                                                                                                  gCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGcgccgagccgctgagcgtggaggcactggccgcgcgggccaacatgagcgtttcgaccttccatgaacacttcaagcgctgcaccgacatggcgccaatgcag                                          <  3:97234‑M2/139‑104 (MQ=255)                                                                                                   cTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGcgcg                                                                       <  4:172153/109‑1 (MQ=255)                                                                                                   cTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGcgcg                                                                       >  3:172153/1‑109 (MQ=255)                                                                                                    tCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGcgccgagccgctgagcgtggaggcactggccgcgcgggccaacatgagcgtttcgaccttccatgaacacttcaagcgctgcaccgacatggcgccaatgcagtacctgaagcgc                              <  1:215041‑M2/149‑116 (MQ=255)                                                                                                    tCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCtt                              >  3:276743/1‑149 (MQ=255)                                                                                                     cGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCgg                                                                                    >  8:322630/1‑94 (MQ=255)                                                                                                     cGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCgg                                                                                    <  7:322630/94‑1 (MQ=255)                                                                                                       gCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCTTGGc                           <  4:276743/149‑1 (MQ=255)                                                                                                         gTAGTGCTCGCGCAGGTGGGCGAGGGCGGcgccgagccgctgagcgtggaggcactggccgcgcgggccaacatgagcgtttcgaccttccatgaacacttcaagcgctgcaccgacatggcgccaatgcagtacctgaagcgcttgcg                         <  3:243796‑M2/149‑121 (MQ=255)                                                                                                              gCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCa                                     <  1:150105/132‑1 (MQ=255)                                                                                                              gCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCa                                     >  2:150105/1‑132 (MQ=255)                                                                                                                tCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCTTGGCGTCAAGCgg                  >  1:191794/1‑149 (MQ=255)                                                                                                                  gcgcAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCTTGGCGTCAAGCggg                 <  2:117834/148‑1 (MQ=255)                                                                                                                        gTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCTTGGCGTCAAGCGGGTCCTg            >  3:220385/1‑147 (MQ=255)                                                                                                                          gggCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCTTGGCGTCAAGCGGGTCCTgcagg        <  2:191794/149‑1 (MQ=255)                                                                                                                             cGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTcgc                                                       <  3:241743/99‑1 (MQ=255)                                                                                                                             cGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTcgc                                                       >  4:241743/1‑99 (MQ=255)                                                                                                                             cGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCTTGGCGTCAAGCGGGTCCTgcaggcag     <  4:220385/149‑1 (MQ=255)                                                                                                                                gggCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCTTGGCGTCAAGCGGGTCCTGCAGGCAGTgc  <  1:272395/149‑1 (MQ=255)                                                                                                                                     |                                                                                                                                                TACTGCATTGGCGCCATGTCGGTGCAGCGCTTGAAGTGTTCATGGAAGGTCGAAACGCTCATGTTGGCCCGCGCGGCCAGTGCCTCCACGCTCAGCGGCTCGGCGTAGTGCTCGCGCAGGTGGGCGAGGGCGGCGCCGATGCGGGCGAAGTGCCCCTGTTGCTCCACCAGTGCCCGCAACACACCGGCCTGCGGGCCGCGCAGCGCGGTATACAGCACCTCGCGTACGCGCGCCGGGCCCAGTACCTTGGCGTCAAGCGGGTCCTGCAGGCAGTGC  >  NC_002947/2772088‑2772363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.