New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2902753	53 (1.000)	3 (0.060)	3/246	NT	5.9%	coding (1835/1908 nt)	quiC	3‑dehydroshikimate dehydratase
	?	NC_002947	= 2902805	45 (0.880)					coding (1887/1908 nt)	quiC	3‑dehydroshikimate dehydratase

CGTGCTGTATGACCGCGACGCTCAAGGTGGCGAGCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2902634‑2902753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCGCCCCGCTACGGGCCTTGGCCATGGCTGCCAGGCGCACCGCAACGTTGGCAGCGCC  <  NC_002947/2902805‑2902749                                                                                                                                                                                   CGTGCTGTATGACCGCGACGCTCAAGGTGGCGAGCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGC                                                             >  5:286216/1‑118 CGTGCTGTATGACCGCGACGCTCAAGGTGGCGAGCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGC                                                             <  6:286216/118‑1        TATGACCGCGACGCTCAAGGTGGCGAGCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGG                                                              <  7:316441/110‑1        TATGACCGCGACGCTCAAGGTGGCGAGCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGG                                                              >  8:316441/1‑110                     CTCAAGGTGGCGAGCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCCGCCCCGCTACGGGCCTTGGCCATGGCTGCCAGGCGCACCGCAACGTTG          >  1:236439/1‑149                            TGGCGAGCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGTGGTACGCTGGTTACGGCGCCGCCCCGCTACGGGCCTTGGCCATGGCTGCCAGGCGCACCGCAACGTTGGCAGCGC   <  2:236439/149‑1                                                    CGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCCGCCCCGCTACGGGCCTTGGCCATGGCTGCCAGGCGCACCGCAACGTTGGCAGCGCC  <  8:223641/126‑1                                                                                                                                                                                   CGTGCTGTATGACCGCGACGCTCAAGGTGGCGAGCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2902634‑2902753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCGCCCCGCTACGGGCCTTGGCCATGGCTGCCAGGCGCACCGCAACGTTGGCAGCGCC  <  NC_002947/2902805‑2902749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.