New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2902753	53 (1.000)	3 (0.060)	3/246	NT	5.9%	coding (1835/1908 nt)	quiC	3‑dehydroshikimate dehydratase
	?	NC_002947	= 2902805	45 (0.880)					coding (1887/1908 nt)	quiC	3‑dehydroshikimate dehydratase

GCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCCACAGGATTATTACGGCCCGATTCAGTGACGCTCAGCCACCATCAACAACGACTGCGGCACCGCGCTCTGCGGATGC  >  NC_002947/2902667‑2902949                                                                                                                                           |                                                                                                                                                 gCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGc                                                                                                                                        >  3:178525/1‑149 (MQ=255)     ttCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGt                                                                                                                                    >  8:302587/1‑149 (MQ=255)     ttCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGt                                                                                                                                    >  3:159012/1‑149 (MQ=255)       ccACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTg                                                                                                                                   <  4:178525/148‑1 (MQ=255)        cACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCt                                                                                                                                 >  3:208239/1‑149 (MQ=255)           gTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTg                                                                                                                                >  1:57497/1‑147 (MQ=255)              tataCCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTCGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTc                                                                                                                           >  5:355142/1‑149 (MQ=255)                  ccGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTc                                                                                                                           >  7:266452/1‑145 (MQ=255)                  ccGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTc                                                                                                                           <  8:266452/145‑1 (MQ=255)                  ccGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCt                                                                                                                       >  3:251632/1‑149 (MQ=255)                                  gCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTtg                                                                                                       >  7:38981/1‑149 (MQ=255)                                    gTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTtgtg                                                                                                     <  8:38981/149‑1 (MQ=255)                                     tttCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTgg                                                                                                    >  5:252904/1‑149 (MQ=255)                                       tcttcttcGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTgg                                                                                                    >  8:250308/1‑147 (MQ=255)                                            ttcGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTc                                                                                                                           >  5:358267/1‑119 (MQ=255)                                            ttcGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTc                                                                                                                           <  6:358267/119‑1 (MQ=255)                                            ttcGAGATCATCCAGCGCAAGACGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTc                                                                                                                           <  6:95243/119‑1 (MQ=255)                                            ttcGAGATCATCCAGCGCAAGACGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTc                                                                                                                           >  5:95243/1‑119 (MQ=255)                                              cGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTggg                                                                                             <  4:159012/147‑1 (MQ=255)                                              cGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTggg                                                                                             <  4:251632/147‑1 (MQ=255)                                               gagaTCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGTCTGTCTTGTGGGAGTGGGGt                                                                                           <  6:330008/148‑1 (MQ=255)                                                 gaTCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGTGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGt                                                                                           <  1:4241/146‑1 (MQ=255)                                                 gaTCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGt                                                                                           >  2:4241/1‑146 (MQ=255)                                                 gaTCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGAAGCAGGGttca                                                                                        >  4:259929/1‑146 (MQ=255)                                                   tcatcCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAAcc                                                                                      <  2:57497/149‑1 (MQ=255)                                                      tcCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTtgtg                                                                                                     >  1:172415/1‑131 (MQ=255)                                                      tcCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTtgtg                                                                                                     <  2:172415/131‑1 (MQ=255)                                                      tcCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGa                                                                                                  >  5:68800/1‑134 (MQ=255)                                                      tcCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGa                                                                                                  <  6:68800/134‑1 (MQ=255)                                                      tcCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTg                                                                                   >  6:360378/1‑149 (MQ=255)                                                       ccAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGc                                                                                  >  1:106872/1‑149 (MQ=255)                                                        cAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCt                                                                                 <  4:208239/149‑1 (MQ=255)                                                             cAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGAAGCAGGGTTCACCCCACTCCcac                                                                            <  7:250308/149‑1 (MQ=255)                                                              aaGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCcaca                                                                           <  6:252904/149‑1 (MQ=255)                                                               aGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCCACAg                                                                          <  5:360378/149‑1 (MQ=255)                                                               aGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGAAGCAGGGTTCACCCCACTCCcacaa                                                                          <  3:259929/149‑2 (MQ=255)                                                                 gCGGGTTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGTGTGAACCCTGCTTCCACAGGa                                                                        <  6:355142/149‑1 (MQ=255)                                                                     ggTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCCACAGGattat                                                                    >  4:123158/1‑149 (MQ=255)                                                                       tACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTAGGGTGAACCCTGCTTCCACAGGAttatta                                                                  <  7:302587/149‑1 (MQ=255)                                                                               ttACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCCACAGGATTATTACGGCCCGa                                                          <  2:106872/149‑1 (MQ=255)                                                                                   ggCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGgcgccgtaaccagcgtaccccgccttgcgctggatgatctcgaagaagaaacgctcctcgaacggctcg                                                                             <  8:223641‑M2/126‑70 (MQ=255)                                                                                    gcgcTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGgcgccgtaaccagcgtaccacgccttgcgctggatgatctcgaagaagaaacgctcctcgaacggctcggtatagacgtggaacagctcgcca                                                     <  2:236439‑M2/149‑94 (MQ=255)                                                                                           cAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGgcgccgtaaccagcgtaccccgccttgcgctggatgatctcgaagaagaaacgctcctcgaacggctcggtatagacgtggaacagctcgccaccttgag                                              >  1:236439‑M2/1‑49 (MQ=255)                                                                                                ttGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCCACAGGATTATTACGGccc                                                            >  7:292927/1‑130 (MQ=255)                                                                                                ttGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCCACAGGATTATTACGGccc                                                            <  8:292927/130‑1 (MQ=255)                                                                                                ttGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCCACAGGATTATTACGGCCCGATTCAGTGACGCTCAGc                                          >  5:347623/1‑148 (MQ=255)                                                                                                                  ccATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGAAGCAGGGTTCACCCCACTCCcacaa                                                                          >  6:250336/1‑97 (MQ=25)                                                                                                                  ccATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGAAGCAGGGTTCACCCCACTCCcacaa                                                                          <  5:250336/98‑2 (MQ=25)                                                                                                                                       gggCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCCACAGGATTATTACGGCCCGATTCAGTGACGCTCAGCCACCATCAACAACGACTGCGGCACCGCGCTCTGCGGAtgc  <  3:123158/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                 GCTGTTCCACGTCTATACCGAGCCGTTCGAGGAGCGTTTCTTCTTCGAGATCATCCAGCGCAAGGCGGGGTACGCTGGTTACGGCGCTGCCAACGTTGCGGTGCGCCTGGCAGCCATGGCCAAGGCCCGTAGCGGGGCGGCGCGCAAGCCGGTGCTGTAGTCGCCTGCACCGGCCTGTCTTGTGGGAGTGGGGTGAACCCTGCTTCCACAGGATTATTACGGCCCGATTCAGTGACGCTCAGCCACCATCAACAACGACTGCGGCACCGCGCTCTGCGGATGC  >  NC_002947/2902667‑2902949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.