New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2992515	58 (1.100)	4 (0.080)	4/254	NT	7.0%	coding (558/870 nt)	PP_2616	hypothetical protein
	?	NC_002947	4610114 =	48 (0.910)					coding (601/876 nt)	PP_4081	type IV/VI secretion system protein

GAGCGCGTACTTGCCCTTCAGCCCAAGGCACAGGGCGAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2992473‑2992515 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGACCCCTACACCAACGT  >  NC_002947/4610114‑4610229                                                                                                                                                                 GAGCGCGTACTTGCCCTTCAGCCCAAGGCACAGGGCGAAGTACGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCATTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCTACCCCCGAAGAAGTCTGCGACCCC             >  5:113793/1‑148     GCGTACTTGCCCTTCAGCCCAAGGCACAGGGCGAAGTACGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCATTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCTACCCCCGAAGAAGTCTGCGACC               <  3:127155/142‑1     GCGTACTTGCCCTTCAGCCCAAGGCACAGGGCGAAGTACGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCATTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCTACCCCCGAAGAAGTCTGCGACC               >  4:127155/1‑142             GCCCTTCAGCCCAAGGCACAGGGCGAAGTACGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCATTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCTACCCCCGAAGAAGTCTGCGACCCCTACACCAATGT  <  6:113793/147‑1                                                                                                                                                                 GAGCGCGTACTTGCCCTTCAGCCCAAGGCACAGGGCGAAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2992473‑2992515 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGACCCCTACACCAACGT  >  NC_002947/4610114‑4610229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.