| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2992515 | 58 (1.100) | 4 (0.080) | 4/254 | NT | 7.0% | coding (558/870 nt) | PP_2616 | hypothetical protein |
| ? | NC_002947 | 4610114 = | 48 (0.910) | coding (601/876 nt) | PP_4081 | type IV/VI secretion system protein | |||||
CGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGACCCCTACACCAACGTCGCCCCCAGAAACTTCCGCATGAGC > NC_002947/4609968‑4610254 | cGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGCTTCAGGAGCACAAGCGTTATCTGGACGTACTGGAGTTGATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATgcg < 5:252607/149‑1 (MQ=11) tCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTcgcg > 3:154328/1‑149 (MQ=32) aGCATCTTCCACGACGAGACCTGGGGTGGAGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGcc > 1:203716/1‑149 (MQ=17) acgacgAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAg > 1:201767/1‑144 (MQ=32) acgacgAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAg < 2:201767/144‑1 (MQ=32) acgacgAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCgaa < 6:317091/149‑1 (MQ=32) cgaGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCgcgc > 3:51412/1‑134 (MQ=32) cgaGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCgcgc < 4:51412/134‑1 (MQ=32) gagaCCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAac < 8:237275/149‑1 (MQ=32) gaCCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGaaa > 3:143462/1‑146 (MQ=32) gaCCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGaaa < 4:143462/146‑1 (MQ=32) gtggggAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGc > 5:238608/1‑148 (MQ=32) ggAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCa > 2:237904/1‑145 (MQ=32) ggAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCa < 1:237904/145‑1 (MQ=32) gtaaaaaTCTTCACCGTTTTTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCa < 1:143012/142‑1 (MQ=12) gAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGCACGTACTGGAGTTCATGTAATTCGCCCTGTGCGTTGGGCTGAAGGGCAAGTATGCGCACGCGCCGAAAGGCGAAGAAACAATCACCGcc > 2:143012/1‑143 (MQ=11) aaaaaTCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGAtt > 1:181546/1‑148 (MQ=34) aaaaTCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCa > 3:101255/1‑149 (MQ=34) cACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTcgc < 2:19352/105‑1 (MQ=32) cACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCaa < 2:203716/145‑1 (MQ=34) cACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCATTGGGCTGAAGGGCAAGTATGCGCTcgc > 1:19352/1‑105 (MQ=17) aCCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCa > 7:55153/1‑149 (MQ=34) ccGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACGGGAGTTAATGTACTTAGCCCTGTGCCGTGGGCTGAAGGGCAAGTATTCGCTCGCGCCGAAAGGCGAAGCAACACTAAACGCACTGATTAACCAAATGCAc > 1:82645/1‑149 (MQ=11) cGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACt < 6:62592/144‑1 (MQ=34) cGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACt > 5:62592/1‑144 (MQ=34) aTTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGa < 4:154328/148‑1 (MQ=34) cAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTgc < 6:253524/148‑1 (MQ=34) aGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTgcgc > 5:150388/1‑149 (MQ=34) tCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCgaa < 6:238608/148‑1 (MQ=37) cAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCAc > 8:288199/1‑140 (MQ=37) cAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCAc < 7:288199/140‑1 (MQ=37) ggACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAg < 3:340419/71‑1 (MQ=34) ggACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAg > 4:340419/1‑71 (MQ=34) gACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCAccccc < 6:42783/141‑1 (MQ=37) gACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCAccccc > 5:42783/1‑141 (MQ=37) aCGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTc < 4:101255/149‑1 (MQ=37) ggAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGAcc > 6:220116/1‑149 (MQ=37) gAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCcgcg > 7:109595/1‑112 (MQ=35) gAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCcgcg < 8:109595/112‑1 (MQ=35) gAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGAccc < 2:181546/149‑1 (MQ=37) gagcgcgtacttgcccttcagcccaaggcacagggcgaagtacGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCATTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCTACCCCCGAAGAAGTCTGCGAcccc > 5:113793‑M2/44‑148 (MQ=255) gcgtacttgcccttcagcccaaggcacagggcgaagtacGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCATTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCTACCCCCGAAGAAGTCTGCGAcc < 3:127155‑M2/103‑1 (MQ=255) gcgtacttgcccttcagcccaaggcacagggcgaagtacGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCATTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCTACCCCCGAAGAAGTCTGCGAcc > 4:127155‑M2/40‑142 (MQ=255) tGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAAc > 6:215080/1‑71 (MQ=34) tGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAAc < 5:215080/71‑1 (MQ=34) gcccttcagcccaaggcacagggcgaagtacGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCATTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCTACCCCCGAAGAAGTCTGCGACCCCTACACCAATGt < 6:113793‑M2/116‑1 (MQ=255) tgCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGACCCCTACACCAACGTCGCCCCCa < 2:82645/148‑1 (MQ=255) gggCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGCAGTATGCGCCCCATACACCAACGTCGCCCCCAGAAACtt > 2:96354/1‑149 (MQ=255) gCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCTAAGAAGTCTGCTACCCCTACACCAACGTCGCCCCCAGAAACTTcc < 6:150388/149‑1 (MQ=255) gCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGACCCCTACACCAACGTCGCCCCCAGAAACTTcc < 8:55153/149‑1 (MQ=255) gggCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACt < 7:109947/48‑1 (MQ=255) gggCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACt > 8:109947/1‑48 (MQ=255) gCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGACCCCTACACCAACGTCGCCCCCAGAAACTTCCGCATGAGc > 3:237879/1‑149 (MQ=255) tGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGACCCCTACACCAACGTCGCCCCCAGAAACTTCCGCAt < 6:226065/138‑1 (MQ=255) | CGCTGCTCAGCATCTTCCACGACGAGACCTGGGGTGGGGAAAAAATCTTCACCGTGATTACCCGCCTGATGCAGGAGCCCAAGCGTTATCAGGACGTACTGGAGTTCATGTACTTCGCCCTGTGCCTTGGGCTGAAGGGCAAGTATGCGCTCGCGCCGAAAGGCGAAGAAACACTCAACGCACTGATTCACCAACTGCACGGGATCATCCGCGAACTGCGCGGCCCCACCCCCGAAGAAGTCTGCGACCCCTACACCAACGTCGCCCCCAGAAACTTCCGCATGAGC > NC_002947/4609968‑4610254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |