| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3030603 | 65 (1.230) | 4 (0.080) | 4/236 | NT | 6.0% | intergenic (+603/‑91) | pcaY/mgtA | aromatic acid chemoreceptor/ATP‑dependent magnesium transporter |
| ? | NC_002947 | = 3030618 | 66 (1.350) | intergenic (+618/‑76) | pcaY/mgtA | aromatic acid chemoreceptor/ATP‑dependent magnesium transporter | |||||
ACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAATCAAACCATGGATTGCGCGAGTAGAAAGTTCGCTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3030471‑3030603‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgaGAGTCGGAAGTTGTGTCGGCAGCGAACTTTCTACTCGCGCAATCCATGGTTTGATTCCTTTTCATAAACACAGGGAAATAGTTATCCCGCGAACTTTTAACATGAAAAGTTCGAGTACAAAGATACCGTTCAATATCTTTTATTCAG < NC_002947/3030618‑3030472 ACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAATCAAACCATGGATTGCGCGAGTAGAAAGTTCGCTGCC < 3:177023/131‑1ACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAATCAAACCATGGATTGCGCGAGTAGAAAGTTCGCTGCC > 4:177023/1‑131 CCTGTGTTTATGAAAAGGAATCAAACCATGGATTGCGCGAGTAGAAAGTTCGCTGCCGAGAGTCGGAAGTTGTGTCGGCAG < 7:252383/81‑1 CCTGTGTTTATGAAAAGGAATCAAACCATGGATTGCGCGAGTAGAAAGTTCGCTGCCGAGAGTCGGAAGTTGTGTCGGCAG > 8:252383/1‑81 GGAATCAAACCATGGATTGCGCGAGTAGAAAGTTCGCTGCCGAGAGTCGGAAGTTGTGTCGGCAGC < 5:79816/66‑1 GGAATCAAACCATGGATTGCGCGAGTAGAAAGTTCGCTGCCGAGAGTCGGAAGTTGTGTCGGCAGC > 6:79816/1‑66 CGCTGCCGAGAGTCGGAAGTTGTGTCGGCAGCGAACTTTCTACTCGCGCAATCCATGGTTTGATTCCTTTTCATAAACACAGGGAAATAGTTATCCCGCGAACTTTTAACATGAAAAGTTCGAGTACAAAGATACCGTTCAATATCTTT < 4:24429/149‑1 CGCTGCCGAGAGTCGGAAGTTGTGTCGGCAGCGAACTTTCTACTCGCGCAATCCATGGTTTGATTCCTTTTCATAAACACAGGGAAATAGTTATCCCGCGAACTTTTAACATGAAAAGTTCGAGTACAAAGATACCGTTCAATATCTTT < 8:34258/149‑1 CTGCCGAGAGTCGGAAGTTGTGTCGGCAGCGAACTTTCTACTCGCGCAATCCATGGTTTGATTCCTTTTCATAAACACAGGGAAATAGTTATCCCGCGAACTTTTAACATGAAAAGTTCGAGTACAAAGATACCGTTCAATATCTTTTA < 6:49049/149‑1 CCGAGAGTCGGAAGTTGTGTCGGCAGCGAACTTTCTACTCGCGAAATCCATGGTTTGATTCCTTTTCATAAACACAGGGAAATAGTTATCCCGCGAACTTTTAACATGAAAAGTTCGAGTACAAAGATACCGTTCAATATCTTTTATT > 8:28887/1‑148 GAGAGTCGGAAGTTGTGTCGGCAGCGAACTTTCTACTCGCGCAATCCATGGTTTGATTCCTTTTCATAAACACAGGGAAATAGTTATCCCGCGAACTTTTAACATGAAAAGTTCGAGTACAAAGATACCGTTCAATATCTTTTATTCAG > 6:153910/1‑149 ACTGAATAAAAGATATTGAACGGTATCTTTGTACTCGAACTTTTCATGTTAAAAGTTCGCGGGATAACTATTTCCCTGTGTTTATGAAAAGGAATCAAACCATGGATTGCGCGAGTAGAAAGTTCGCTGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3030471‑3030603‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgaGAGTCGGAAGTTGTGTCGGCAGCGAACTTTCTACTCGCGCAATCCATGGTTTGATTCCTTTTCATAAACACAGGGAAATAGTTATCCCGCGAACTTTTAACATGAAAAGTTCGAGTACAAAGATACCGTTCAATATCTTTTATTCAG < NC_002947/3030618‑3030472 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |