New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3042377	52 (0.980)	5 (0.100)	5/246	NT	8.6%	coding (280/315 nt)	PP_5537	membrane protein
	?	NC_002947	= 3042402	56 (1.090)					coding (305/315 nt)	PP_5537	membrane protein

GGTGGTCATCGACCTGTACCTGATGGCCGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCT‑GCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3042229‑3042377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggCGCCCCTCGGCAACGCCTCTGGTCACCAGGT  <  NC_002947/3042402‑3042372                                                                                                                                                                                       GGTGGTCATCGACCTGTACCTGATGGCCGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCT‑GCTGCTGACCGTCGTGTTCGTCTCGCTGGGGCCGTTGCTGTACCTGG                                 >  1:66359/1‑149    GGTCATCGACCTGTACCTGATGGCCGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGACCCGCGATCGCGGTGCTGCCTTACCT‑GCTACTGACCGTCGTGTTGGTTTCGCTGGGGCCGTTGATGTACCGGGgga                              >  2:287735/1‑146                                CTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCT‑GCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGCGCCCCTCGGCAACGCCTCTGGTCACCAGGT  <  7:209277/149‑1                                    CCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCT‑GCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGCGCCCCTCGGCAACGCCTCTGGTCACCAGG   <  1:25460/144‑1                                    CCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCT‑GCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGCGCCCCTCGGCAACGCCTCTGGTCACCAGG   >  2:25460/1‑144                                                                          AGAGCCGGGATCGCGGTGCTGCCTTACCTGGCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGCGCCCCTCGGCAACGCCTCTGGTCACCAG    >  1:207246/1‑106                                                                          AGAGCCGGGATCGCGGTGCTGCCTTACCT‑GCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGGCGCCCCTCGGCAACGCCTCTGGTCACCAG    <  2:207246/105‑1                                                                                                                                                                                       GGTGGTCATCGACCTGTACCTGATGGCCGGGCTGGCCGGTTGCTGGATGGTGCGAGACAACCGCATGCGCGGCAGAGCCGGGATCGCGGTGCTGCCTTACCT‑GCTGCTGACCGTCGTGTTCGTTTCGCTGGGGCCGTTGCTGTACCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3042229‑3042377 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggCGCCCCTCGGCAACGCCTCTGGTCACCAGGT  <  NC_002947/3042402‑3042372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.