New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3259439	63 (1.190)	4 (0.080)	4/246	NT	6.2%	coding (753/1452 nt)	PP_2856	hypothetical protein
	?	NC_002947	= 3259473	60 (1.170)					coding (719/1452 nt)	PP_2856	hypothetical protein

GACGCGCTGTGGCTGCCGCTGGCAGAGCCACTGGCACCCCAGCCGAACGAGCCACTTGCGCTCGAGTTGTGGGAGCCGCTGGCATTGCTGGATTGCGAGCCGCTGGCGTTCCAGCCACTGGAGCCGCTGGAACTGGCGCTTTGCGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3259290‑3259439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgACGACCGCAGCTCGTCTTCGAGCTTCAGCGTCGCCGGTGCGCAAAGCGCCAGTTCCAGCGGCTCCAGTGGCTGGAACGCCAGCGGCTCGCAATCCAGCAATGCCAGCGGCTCCCACAACTCGAGCGCAAGTGGCTCGTTCGGCTGGGG  <  NC_002947/3259473‑3259326                                                                                                                                                                                                                                                                                                            GACGCGCTGTGGCTGCCGCTGGCAGAGCCACTGGCACCCCAGCCGAACGAGCCACTTGCGCTCGAGTTGTGGGAGCCGCTGGCATTGCTGGATTGCGAGCCGCTGGCGTTCCAGCCACTGGAGCCGCTGGAACTGGCGCTTTGCGCACC                                                                                                                                                       >  8:281420/1‑149                            CCACTGGCACCCCAGCCGAACGAGCCACTTGCGCTCGAGTTGTGGGAGCCGCTGGCATTGCTGGATTGCGAGCCGCTGGCGTTCCAGCCACTGGAGCCGCTGGAACTGGCGCTTTGCGCACCGACGACCGCAGCTCGTCTTCGAGCTT                                                                                                                             >  3:286578/1‑148                                      CCCAGCCGAACGAGCCACTTGCGCTCGAGTTGTGGGAGCCGCTGGCATTGCTGGATTGCGAGCCGCTGGCGTTCCAGCCACTGGAGCCGCTGGAACTGGCGCTTTGCGCACCGACGACCGCAGCTCGTCTTCGAGCTTCAGCGTCGCCG                                                                                                                  >  4:162024/1‑149                                        CAGCCGAACGAGCCACTTGCGCTCGAGTTGTGGGAGCCGCTGGCATTGCTGGATTGCGAGCCGCTGGCGTTCCAGCCACTGGAGCCGCTGGAACTGGCGCTTTGCGCACCGACGACCGCAGCTCGTCTTCGAGCTTCAGCGTCGCCGGT                                                                                                                <  4:286578/149‑1                                          GCCGAACGAGCCACTTGCGCTCGAGTTGTGGGAGCCGCTGGCATTGCTGGATTGCGAGCCGCTGGCGTTCCAGCCACTGGAGCCGCTGGAACTGGCGCTTTGCGCACCGACGACCGCAGCTCGTCTTCGAGCTTCAGCGTCGCCGGTGC                                                                                                              <  3:162024/149‑1                                                                                                                                                    CCGACGACCGCAGCTCGTCTTCGAGCTTCAGCGTCGCCGGTGCGCAAAGCGCCAGTTCCAGCGGCTCCAGTGGCTGGAACGCCAGCGGCTCGCAATCCAGCAATGCCAGCGGCTCCCACAACTCGAGCGCAAGTGGCTCGTTCGGCTGG    >  2:153682/1‑149                                                                                                                                                     CGACGACCGCAGCTCGTCTTCGAGCTTCAGCGTCGCCGGTGCGCAAAGCGCCAGTTCCAGCGGCTCCAGTGGCTGGAACGCCAGCGGCTCGCAATCCAGCAATGCCAGCGGCTCCCACAACTCGAGCGCAAGTGGCTCGTTCGGCTGGG   <  1:153682/149‑1                                                                                                                                                     CGACGACCGCAGCTCGTCTTCGAGCTTCAGCGTCGCCGGTGCGCAAAGCGCCAGTTCCAGCGGCTCCAGTGGCTGGAACGCCAGCGGCTCGCAATCCAGCAATGCCAGCGGCTCCCACAACTCGAGCGCAAGTGGCTCGTTCGGCTGGG   <  1:69160/149‑1                                                                                                                                                      GACGACCGCAGCTCGTCTTCGAGCTTCAGCGTCGCCGGTGCGCAAAGCGCCAGTTCCAGCGGCTCCAGTGGCTGGAACGCCAGCGGCTCGCAATCCAGCAATGCCAGCGGCTCCCACAACTCGAGCGCAAGTGGCTCGTTCGGCTGGGG  <  7:113838/149‑1                                                                                                                                                                                                                                                                                                            GACGCGCTGTGGCTGCCGCTGGCAGAGCCACTGGCACCCCAGCCGAACGAGCCACTTGCGCTCGAGTTGTGGGAGCCGCTGGCATTGCTGGATTGCGAGCCGCTGGCGTTCCAGCCACTGGAGCCGCTGGAACTGGCGCTTTGCGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3259290‑3259439 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgACGACCGCAGCTCGTCTTCGAGCTTCAGCGTCGCCGGTGCGCAAAGCGCCAGTTCCAGCGGCTCCAGTGGCTGGAACGCCAGCGGCTCGCAATCCAGCAATGCCAGCGGCTCCCACAACTCGAGCGCAAGTGGCTCGTTCGGCTGGGG  <  NC_002947/3259473‑3259326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.