| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3265688 = | 38 (0.720) | 4 (0.080) | 4/240 | NT | 9.3% | intergenic (+11/‑18) | uppP/PP_2863 | undecaprenyl‑diphosphatase/membrane protein |
| ? | NC_002947 | 3265760 = | 42 (0.840) | coding (55/378 nt) | PP_2863 | membrane protein | |||||
ATCGTTCCAGGCCATGCGCGCCGCCCCCAGGCCGGGCAACAGGCAAAGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3265792‑3265688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcccGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAA > NC_002947/3265760‑3265903 ATCGTTCCAGGCCATGCGCGCCGCCCCCAGGCCGGGCAACAGGCAAAGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCCC < 7:190643/105‑1ATCGTTCCAGGCCATGCGCGCCGCCCCCAGGCCGGGCAACAGGCAAAGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCCC > 8:190643/1‑105ATCGTTCCAGGCCATGCGCGCCGCCCCCAGGCCGGGCAACAGGCAAAGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCC > 3:108993/1‑104ATCGTTCCAGGCCATGCGCGCCGCCCCCAGGCCGGGCAACAGGCAAAGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCC < 4:108993/104‑1 CGGGCAACAGGCAAAGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGA > 3:333897/1‑149 GGGCAACAGGCAAAGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGAT > 3:259604/1‑149 AACAGGCAAAGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGACCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGC > 3:188908/1‑149 AGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTG < 4:259604/149‑1 TTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAG < 2:175042/147‑1 GCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAA < 4:333897/148‑1 GCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAG > 3:124384/1‑109 GCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAG < 4:124384/109‑1 ATCGTTCCAGGCCATGCGCGCCGCCCCCAGGCCGGGCAACAGGCAAAGCACGCCCAACAGCAGCAGCTTCAGGCGCACGTTGCGCACGCCTTCAGCCCGTTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3265792‑3265688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcccGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCTGATCAGCCTGTTGCTGTATTGGCAGGACAAGCGGCAGGCACGTAACCAGGCCTGGCGTACACCCGAGAAA > NC_002947/3265760‑3265903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |