New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3265688 =	38 (0.720)	4 (0.080)	4/240	NT	9.3%	intergenic (+11/‑18)	uppP/PP_2863	undecaprenyl‑diphosphatase/membrane protein
	?	NC_002947	3265760 =	42 (0.840)					coding (55/378 nt)	PP_2863	membrane protein

ATTGCCGTACGGGCGTTGCTCAAGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCT  >  NC_002947/3265540‑3265833                                                                                                                                                     |                                                                                                                                                  aTTGCCGTACGGGCGTTGCTCAAGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTg                                                                                                                                                   <  6:40143/149‑1 (MQ=255)  ttGCCGTACGGGCGTTGCTCAAGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTgg                                                                                                                                                  <  5:7714/149‑1 (MQ=255)   tGCCGTACGGGCGTTGCTCAAGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTggg                                                                                                                                                 >  2:201586/1‑149 (MQ=255)     tttctcgggtgtacgccaggcctggttacgtgcctgccgcttgtcctgccaatacagcaacaggctgatcaggctcatggccgggtacaacgccaatggccaccaggcctgatcgttccaggccatgcgcgccgcccccaggccGGGc                                                                                                                                                <  4:333897‑M1/4‑1 (MQ=255)        ctcgggtgtacgccaggcctggttacgtgcctgccgcttgtcctgccaatacagcaacaggctgatcaggctcatggccgggtacaacgccaatggccaccaggcctgatcgttccaggccatgcgcgccgcccccaggccGGGCaa                                                                                                                                              <  2:175042‑M1/6‑1 (MQ=255)               gTTGCTCAAGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGGGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTg                                                                                                                                       >  1:110846/1‑147 (MQ=255)                ttGCTCAAGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAg                                                                                                                                    <  5:201946/149‑1 (MQ=255)                   cTCAAGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTgg                                                                                                                                                  >  4:123811/1‑132 (MQ=255)                   cTCAAGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTgg                                                                                                                                                  <  3:123811/132‑1 (MQ=255)                       aGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCt                                                                                                                                        >  1:106947/1‑138 (MQ=255)                       aGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCt                                                                                                                                        <  2:106947/138‑1 (MQ=255)                          tCATTGCCAACCATAGCTACGCGGCATTTCCCAGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCAGGCAGTTCGGTTGCGTCGACTGGTCCACGGCAAATCGCTGAGGCGCTGCGTGGGCAACGCGCTGAAGGCGTGCGCa                                                                                                                           >  4:44240/1‑148 (MQ=255)                               gCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTg                                                                                                                      <  6:70481/148‑1 (MQ=255)                                ccAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGGgcg                                                                                                                    <  8:210282/149‑1 (MQ=255)                                      aTAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTg                                                                                                                >  7:62303/1‑147 (MQ=255)                                          cTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAgctg                                                                                                          <  8:62303/149‑1 (MQ=255)                                            cttgtcctgccaatacagcaacaggctgatcaggctcatggccgggtacaacgccaatggccaccaggcctgatcgttccaggccatgcgcgccgcccccaggccGGGc                                                                                                                                                >  3:124384‑M1/106‑109 (MQ=255)                                            cttgtcctgccaatacagcaacaggctgatcaggctcatggccgggtacaacgccaatggccaccaggcctgatcgttccaggccatgcgcgccgcccccaggccGGGc                                                                                                                                                <  4:124384‑M1/4‑1 (MQ=255)                                                       gCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGc                                                                                              <  1:201586/148‑1 (MQ=255)                                                           cagcaacaggctgatcaggctcatggccgggtacaacgccaatggccaccaggcctgatcgttccaggccatgcgcgccgcccccaggccGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCt                                                                                         <  4:259604‑M1/59‑1 (MQ=255)                                                              aTCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGaa                                                                                                              <  1:18727/125‑1 (MQ=255)                                                              aTCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGaa                                                                                                              >  2:18727/1‑125 (MQ=255)                                                               tCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGc                                                                                     <  3:345619/149‑1 (MQ=255)                                                               tCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGc                                                                                     <  3:44240/149‑1 (MQ=255)                                                                    gctgatcaggctcatggccgggtacaacgccaatggccaccaggtctgatcgttccaggccatgcgcgccgcccccaggccGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGtt                                                                                >  3:188908‑M1/82‑149 (MQ=255)                                                                     tgtgTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGtt                                                                                <  2:110846/148‑1 (MQ=255)                                                                        atcaggctcatggccgggtacaacgccaatggccaccaggcctgatcgttccaggccatgcgcgccgcccccaggccGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGccc                                                                            >  3:259604‑M1/78‑149 (MQ=255)                                                                         tcaggctcatggccgggtacaacgccaatggccaccaggcctgatcgttccaggccatgcgcgccgcccccaggccGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCg                                                                           >  3:333897‑M1/77‑149 (MQ=255)                                                                                  ttCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAgct                                                                                                           <  5:149746/108‑1 (MQ=255)                                                                                  ttCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAgct                                                                                                           >  6:149746/1‑108 (MQ=255)                                                                                           gCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTgggg                                                                   <  7:56919/139‑1 (MQ=255)                                                                                           gCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTgggg                                                                   >  8:56919/1‑139 (MQ=255)                                                                                            cGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCAt                                                        >  3:37903/1‑149 (MQ=255)                                                                                             gACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATg                                                       >  4:237497/1‑149 (MQ=255)                                                                                                 tGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGTGCGCATGGCCt                                                   >  6:84858/1‑149 (MQ=255)                                                                                                     aGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGaa                                               >  4:175819/1‑149 (MQ=255)                                                                                                     aGTTCGGTTGGGGCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGaa                                               <  1:241357/149‑1 (MQ=255)                                                                                                       ttCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCAt                                                        >  5:152960/1‑138 (MQ=255)                                                                                                       ttCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCAt                                                        <  6:152960/138‑1 (MQ=255)                                                                                                           gTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCa                                         <  3:175819/149‑1 (MQ=255)                                                                                                                     cTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCtggtgg                               >  1:187290/1‑149 (MQ=255)                                                                                                                      tGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGaa                                               <  8:325788/132‑1 (MQ=255)                                                                                                                      tGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGaa                                               >  7:325788/1‑132 (MQ=255)                                                                                                                        gTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCtggtg                                >  1:11754/1‑145 (MQ=255)                                                                                                                        gTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCtggtg                                <  2:11754/145‑1 (MQ=255)                                                                                                                         tCCACGGCACATGGCTGAGGCGCTGCTTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCTCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAgg                                       <  5:160136/137‑1 (MQ=255)                                                                                                                         tCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTCCGCAACGTTCGCCTGAAGCTGCTGCTGTTGTGCGTGCTTTGCCTGTTGCCCGGCCTGGTGGAGGCGCGCATGGACTGGAACCATAAgg                                       >  6:160136/1‑137 (MQ=255)                                                                                                                                cacaTGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGtt                    <  3:237497/149‑1 (MQ=255)                                                                                                                                 acaTGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTg                   >  1:15189/1‑149 (MQ=255)                                                                                                                                   aTGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTa                 >  8:275751/1‑149 (MQ=255)                                                                                                                                               cTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGACCTGGTGGCCATTGGCGTTGTACCCGGCCATGAg     <  4:37903/149‑1 (MQ=255)                                                                                                                                                  cGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGcc   <  7:275751/148‑1 (MQ=255)                                                                                                                                                  cGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCt  <  2:187290/149‑1 (MQ=255)                                                                                                                                                     GGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGAt                                           <  7:190643‑M1/105‑1 (MQ=255)                                                                                                                                                     GGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGAt                                           >  8:190643‑M1/1‑105 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ATTGCCGTACGGGCGTTGCTCAAGTTCATTGCCAACCATAGCTACGCGGCATTTGCCTGGTATCGCATTGTGTTCGGCCTGTTCATTCTGGCGACCTGGCAGTTCGGTTGGGTCGACTGGTCCACGGCACATGGCTGAGGCGCTGCGTGGGCAACGGGCTGAAGGCGTGCGCAACGTGCGCCTGAAGCTGCTGCTGTTGGGCGTGCTTTGCCTGTTGCCCGGCCTGGGGGCGGCGCGCATGGCCTGGAACGATCAGGCCTGGTGGCCATTGGCGTTGTACCCGGCCATGAGCCT  >  NC_002947/3265540‑3265833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.