| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3306981 = | 58 (1.100) | 4 (0.080) | 4/234 | NT | 6.6% | coding (618/696 nt) | csiR | DNA‑binding transcriptional repressor |
| ? | NC_002947 | 3307060 = | 60 (1.230) | coding (539/696 nt) | csiR | DNA‑binding transcriptional repressor | |||||
TGACGCAGACGGTGTTTTCCGAAGAGGCGCTGGCGCTCAAGCGCCAGGAGCATGCGGCACTGGTCGAGGTGATCCTCGCCCGGGATGCCAAAACCGCCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3307084‑3306981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccagcgccTCTTCGGAAAACACCGTCTGCGTCAGCCACAGGTGGCGGTAGCGCTCGGCCTGGTCGAACAGGTAGGTGCGTGCCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGG > NC_002947/3307060‑3307165 TGACGCAGACGGTGTTTTCCGAAGAGGCGCTGGCGCTCAAGCGCCAGGAGCATGCGGCACTGGTCGAGGTGATCCTCGCCCGGGATGCCAAAACCGCCAGCGCC > 7:246587/1‑104TGACGCAGACGGTGTTTTCCGAAGAGGCGCTGGCGCTCAAGCGCCAGGAGCATGCGGCACTGGTCGAGGTGATCCTCGCCCGGGATGCCAAAACCGCCAGCGCC < 8:246587/104‑1 GAGGCGCTGGCGCTCAAGCGCCAGGAGCATGCGGCACTGGTCGAGGTGATCCTCGCCCGGGATGCCAAAACCGCCAGCGCCTCTTCGGAAAACACCGTCTGCGTCAGCCACAGGTGGCGGTAGCGCTCGGCCTGGTCGAACAGGTAGGT > 3:191858/1‑149 GCGCTGGCGCTCAAGCGCCAGGAGCATGCGGCACTGGTCGAGGTGATCCTCGCCCGGGATGCCAAAACCGCCAGCGCCTCTTCGGAAAACACCGTCTGCGTCAGCCACAGGTGGCGGTAGCGCTCGGCCTGGTCGAACAGGTAGGTGCG > 8:128079/1‑149 CGCTGGCGCTCAAGCGCCAGGAGCATGCGGCACTGGTCGAGGTGATCCTCGCCCGGGATGCCAAAACCGCCAGCGCCTCTTCGGAAAACACCGTCTGCGTCAGCCACAGGTGGCGGTAGCGCTCGGCCTGGTCGAACAGGTAGGTGCGT < 4:191858/149‑1 GTCGAGGTGATCCTCGCCCGGGATGCCAAAACCGCCAGCGCCTCTTCGGAAAACACCGTCTGCGTCAGCCACAGGTGGCGGTAGCGCTCGGCCTGGTCGAACAGGTAGGTGCGTGCCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGG < 7:128079/148‑1 TGACGCAGACGGTGTTTTCCGAAGAGGCGCTGGCGCTCAAGCGCCAGGAGCATGCGGCACTGGTCGAGGTGATCCTCGCCCGGGATGCCAAAACCGCCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3307084‑3306981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccagcgccTCTTCGGAAAACACCGTCTGCGTCAGCCACAGGTGGCGGTAGCGCTCGGCCTGGTCGAACAGGTAGGTGCGTGCCTGCAGCAGGTGCTTGGAGCCGCAGCCCGAGG > NC_002947/3307060‑3307165 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |