New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3435438 =	60 (1.140)	3 (0.060)	3/240	NT	5.8%	coding (350/981 nt)	gpJ	baseplate/tail fiber protein
	?	NC_002947	3435478 =	41 (0.820)					coding (390/981 nt)	gpJ	baseplate/tail fiber protein

CCGGCTACCGACAAGGCCTCAAGCGACAGCCGCGTGCGGTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3435480‑3435438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtagcCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCATTGTGGTGGT  >  NC_002947/3435478‑3435621                                                                                                                                                                                             CCGGCTACCGACAAGGCCTCAAGCGACAGCCGCGTGCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAG                                        >  2:325837/1‑149          GACAAGGCCTCAAGCGACAGCCGCGTGCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACGAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGA                                                >  3:114151/1‑132          GACAAGGCCTCAAGCGACAGCCGCGTGCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACGAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGA                                                <  4:114151/132‑1                                       GTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCATTGTGGTGGT  >  3:56610/1‑149                                                                                                                                                                                             CCGGCTACCGACAAGGCCTCAAGCGACAGCCGCGTGCGGTAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3435480‑3435438 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtagcCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCATTGTGGTGGT  >  NC_002947/3435478‑3435621

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.