New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3435438 =	60 (1.140)	3 (0.060)	3/240	NT	5.8%	coding (350/981 nt)	gpJ	baseplate/tail fiber protein
	?	NC_002947	3435478 =	41 (0.820)					coding (390/981 nt)	gpJ	baseplate/tail fiber protein

TGAACCGCGCCGCTGATTACGGTGTGGAGAAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCATTGTGGTGGTCTGCG  >  NC_002947/3435333‑3435626                                                                                                                                                   |                                                                                                                                                     ctcgggggtcaactccgcctcaacaaaccggggcgaatcgaccgacacgttggtcagctcggccgacgcgctcagcccgtgatactcataggcgccgctgctgccgGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCgg                                                                                                                                                    >  2:325837‑M1/107‑149 (MQ=255)  gAACCGCGCCGCTGATTACGGTGTGGAGAAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCgg                                                                                                                                                    >  8:172047/1‑147 (MQ=255)      cgcgCCGCTGATTACGGTGTGGAGAAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGATGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGcagcag                                                                                                                                              >  7:171394/1‑149 (MQ=255)                   aCGGTGTGGAGAAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGa                                                                                                                                  <  5:37037/148‑1 (MQ=255)                    cGGTGTGGAGAAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGt                                                                                                                                <  7:172047/149‑1 (MQ=255)                       tgtgGAGAAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATc                                                                                                                             <  1:193202/149‑1 (MQ=255)                         tgGAGAAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCAc                                                                                                                           <  5:364578/149‑1 (MQ=255)                             gaAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTAt                                                                                                                                    >  6:234763/1‑136 (MQ=255)                             gaAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTAt                                                                                                                                    <  5:234763/136‑1 (MQ=255)                                      tATCCGCCCGGCTGATCCTGATGCGGTGGCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGcgcg                                                                                                               >  1:21510/1‑149 (MQ=255)                                         ccgccgGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGACGCGCCTATGAGTATCACGGGCTGAGCGCGTCgg                                                                                                           >  4:342469/1‑149 (MQ=255)                                                  ggagccTGATGCGGT‑GCCGCCGGTAGAGGCGGGAATGGAGGGCGACGAAGCGCTGCTCTTCCGCACGCGGCTGTCGCGGGAGGGCTTGTCGGTAGCCTGCAGCAGCGGCGCCTATGAGTATCTCGGGCTGAGCGGGTCTGCCGAGCTGa                                                                                                  <  8:171394/145‑1 (MQ=255)                                                    aTCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGa                                                                                                  <  6:135253/147‑1 (MQ=255)                                                    aTCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCGTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTTTCACGGGCTGAGCGCGTCGGCCGAGCTGAc                                                                                                 <  3:342469/148‑1 (MQ=255)                                                        tGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGa                                                                                                  <  7:270330/143‑1 (MQ=255)                                                        tGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGa                                                                                                  >  8:270330/1‑143 (MQ=255)                                                           tGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCTGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACgtgt                                                                                         <  2:21510/149‑1 (MQ=255)                                                           tGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACgtgt                                                                                         <  6:213771/149‑1 (MQ=255)                                                             cGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTgtcg                                                                                       >  6:255314/1‑149 (MQ=255)                                                              ggT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTgtcgg                                                                                      >  2:153226/1‑149 (MQ=255)                                                              ggT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTgtcgg                                                                                      >  8:48516/1‑149 (MQ=255)                                                                   ccgccgGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTgtcggtcg                                                                                   <  2:212127/148‑1 (MQ=255)                                                                                  gTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAgc                                                                                                                  >  6:94471/1‑102 (MQ=255)                                                                                  gTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAgc                                                                                                                  <  5:94471/102‑1 (MQ=255)                                                                                             cgacgaAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGt                                                        <  5:255314/149‑1 (MQ=255)                                                                                              gacgaAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGtt                                                       >  8:300654/1‑149 (MQ=255)                                                                                              gacgaAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGtt                                                       >  7:144118/1‑149 (MQ=255)                                                                                               acgaAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTttgtt                                                                  <  2:132630/137‑1 (MQ=255)                                                                                               acgaAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTttgtt                                                                  >  1:132630/1‑137 (MQ=255)                                                                                                      gctgcgctACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGAccccc                                                >  6:19080/1‑148 (MQ=255)                                                                                                      gctgcgctACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGAccccc                                                >  4:329789/1‑148 (MQ=255)                                                                                                        ccggctaccgacaaggcctcaagcgacagccgcgtgcggtagcCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAg                                             >  2:325837‑M2/44‑149 (MQ=255)                                                                                                                 gacaaggcctcaagcgacagccgcgtgcggtagcCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACGAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGa                                                     >  3:114151‑M2/35‑132 (MQ=255)                                                                                                                 gacaaggcctcaagcgacagccgcgtgcggtagcCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACGAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGa                                                     <  4:114151‑M2/98‑1 (MQ=255)                                                                                                                          tGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACgg                                       <  5:307720/137‑1 (MQ=255)                                                                                                                          tGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACgg                                       >  6:307720/1‑137 (MQ=255)                                                                                                                          tGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTgccg                           <  5:19080/149‑1 (MQ=255)                                                                                                                          tGTAGCTTGAGGCCTTGTAGGTAGCCGGCAGCAGCGGCGCATAAGAGTATCACGGGCAGAGCGCGTCGGCCGAGCTGACCAAc                                                                                             >  4:117252/1‑83 (MQ=255)                                                                                                                                 tGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCgggg                    >  7:202343/1‑149 (MQ=255)                                                                                                                                  gAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGATGTACGGGCCCAGCTGCCGGCCggg                     <  7:48516/147‑1 (MQ=255)                                                                                                                                  gAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCggg                     <  1:153226/147‑1 (MQ=255)                                                                                                                                  gAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCggg                     <  8:144118/147‑1 (MQ=255)                                                                                                                                     gCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTa                                          >  7:74269/1‑123 (MQ=255)                                                                                                                                     gCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTa                                          <  8:74269/123‑1 (MQ=255)                                                                                                                                     gCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCAt                >  7:199133/1‑149 (MQ=255)                                                                                                                                     gCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCAt                >  3:322140/1‑149 (MQ=255)                                                                                                                                          gTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCATTgtgg           >  8:49815/1‑149 (MQ=255)                                                                                                                                              gtagcCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCATTGTggtggt       >  3:56610‑M2/6‑149 (MQ=255)                                                                                                                                                   cGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCATTGTGGTGGTCTGCg  <  4:322140/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TGAACCGCGCCGCTGATTACGGTGTGGAGAAGCTGGTTATCCGCCCGGCTGATCCTGATGCGGT‑GCCGCCGGTAGAGGCGGTAATGGAGGGCGACGAAGCGCTGCGCTACCGCACGCGGCTGTCGCTTGAGGCCTTGTCGGTAGCCGGCAGCAGCGGCGCCTATGAGTATCACGGGCTGAGCGCGTCGGCCGAGCTGACCAACGTGTCGGTCGATTCGCCCCGGTTTGTTGAGGCGGAGTTGACCCCCGAGGTACGGGCCCAGCTGCCGGCCGGGGCCATTGTGGTGGTCTGCG  >  NC_002947/3435333‑3435626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.